Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009709.1 Corchorus capsularis cultivar CVL-1 contig09730, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64864

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16971--17026
27
2.1
27
93
0
94
10
21
7
60
1.53
17825--17854
15
1.9
16
93
6
53
40
6
0
53
1.27
20336--20626
107
2.8
104
87
6
410
40
8
9
41
1.68
23054--23092
14
2.8
14
80
0
51
43
0
0
56
0.99
23119--23183
18
3.7
19
64
17
50
41
0
1
56
1.08
23103--23168
32
2.3
28
79
20
75
37
0
3
59
1.13
24139--25354
439
2.8
437
84
4
1518
42
17
12
27
1.86
33806--33830
12
2.1
12
100
0
50
40
16
12
32
1.84
35668--35731
31
2.1
31
96
0
119
43
20
14
21
1.87
36074--36180
48
2.2
48
86
4
146
6
19
41
32
1.77
36033--36165
16
8.4
16
79
6
146
9
18
35
36
1.84
38465--38546
32
2.6
32
76
3
85
14
20
32
31
1.93
38452--38539
16
5.4
16
68
13
54
14
19
32
32
1.92
40576--40616
2
21.0
2
85
14
59
46
0
2
51
1.14
41335--41360
2
13.0
2
100
0
52
50
0
0
50
1.00
41420--41498
22
3.6
21
78
10
70
39
12
8
39
1.75
41425--41521
43
2.2
44
81
1
115
39
14
9
37
1.78
42431--42455
2
12.5
2
100
0
50
52
0
48
0
1.00
45401--45603
22
9.3
21
76
11
131
30
21
11
36
1.89
45474--45619
44
3.3
44
82
1
177
29
17
15
37
1.90
45474--45619
66
2.2
65
82
4
177
29
17
15
37
1.90
45487--45615
22
5.9
23
81
7
135
31
19
13
36
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50086--50837
416
1.8
416
88
2
1152
31
16
26
24
1.97
56415--56624
22
9.5
22
78
5
111
28
23
13
34
1.93
56421--56621
44
4.6
44
83
3
208
28
22
13
34
1.93
56432--56624
66
2.9
65
78
6
192
29
23
13
33
1.94
63874--63927
28
2.0
28
85
7
76
40
9
1
48
1.46

Tables:   1

The End!