Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009711.1 Corchorus capsularis cultivar CVL-1 contig09732, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36627

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2806--3334
22
24.1
22
66
15
116
37
16
9
37
1.80
3101--3180
23
3.5
23
84
1
99
38
13
6
41
1.70
3124--3241
60
2.0
61
83
5
150
36
15
7
40
1.76
3057--3368
22
14.7
21
69
18
123
37
16
8
37
1.80
3384--3577
22
8.7
22
70
15
91
34
14
10
40
1.81
3432--3531
44
2.3
44
80
3
112
35
15
11
39
1.82
3381--3533
66
2.3
65
80
6
166
34
15
9
39
1.81
3447--3580
44
3.0
45
79
12
141
34
15
11
38
1.83
3632--3686
22
2.5
23
79
8
69
36
18
10
34
1.86
3826--3952
44
2.9
43
82
9
141
37
15
12
33
1.86
3771--3952
22
8.2
22
71
13
113
38
18
10
32
1.85
5666--5730
30
2.1
31
88
2
96
50
4
16
27
1.65
5432--5744
155
2.0
161
90
3
503
48
5
12
33
1.64
6689--6727
16
2.5
15
80
8
51
69
0
0
30
0.89
12629--12683
26
2.1
26
83
6
67
29
21
10
38
1.88
13540--13681
65
2.2
64
91
5
223
14
19
15
51
1.76
13539--13682
66
2.2
65
87
6
220
13
18
15
52
1.75
15304--17131
904
2.0
910
97
2
3434
31
13
17
36
1.89
16824--16858
16
2.2
16
100
0
70
11
25
17
45
1.81
22106--22135
11
2.8
11
95
5
53
40
10
30
20
1.85
26686--26719
14
2.3
15
95
5
61
35
29
0
35
1.58
33650--33698
19
2.5
19
80
12
55
36
18
22
22
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34783--34834
28
1.9
26
84
7
68
46
0
1
51
1.12
34874--34936
33
1.9
33
86
0
90
19
30
41
9
1.83
36429--36590
60
2.7
58
86
4
225
35
19
20
24
1.96
36425--36608
31
6.2
29
66
16
83
34
20
20
25
1.96

Tables:   1

The End!