Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009714.1 Corchorus capsularis cultivar CVL-1 contig09735, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57002

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
434--788
156
2.3
153
80
8
389
30
15
18
34
1.93
1319--1376
20
2.8
21
89
5
100
29
29
15
25
1.96
2314--2355
20
2.2
20
87
8
61
16
4
19
59
1.54
4195--4228
16
2.1
16
94
0
59
64
0
0
35
0.94
5487--5519
17
1.9
17
88
11
50
39
0
0
60
0.97
5927--5957
16
1.9
16
93
0
53
54
0
3
41
1.16
8252--8356
22
4.7
22
75
10
88
37
13
12
37
1.82
8252--8360
44
2.4
45
80
10
118
36
13
11
37
1.82
8297--8372
22
3.5
20
74
15
62
39
9
10
40
1.72
8296--8397
44
2.3
45
80
9
120
37
11
10
40
1.77
8363--8411
21
2.2
23
89
7
75
34
14
10
40
1.79
8363--8422
21
2.8
21
82
5
66
33
13
8
45
1.73
9290--9325
2
18.0
2
100
0
72
50
0
0
50
1.00
9333--9620
146
2.0
147
92
1
488
36
29
7
26
1.85
10021--10071
18
2.7
19
81
9
59
37
7
0
54
1.29
11123--11169
22
2.1
22
88
7
69
63
2
10
23
1.37
11045--11223
94
1.9
94
89
2
279
51
1
12
34
1.47
11311--11369
30
2.0
29
87
6
84
50
0
11
37
1.39
12990--13025
14
2.5
14
86
4
54
0
13
0
86
0.58
12989--13026
15
2.6
14
84
15
51
0
15
0
84
0.63
13988--14094
52
2.1
52
100
0
214
39
5
14
40
1.70
40358--40607
130
1.9
130
91
4
416
23
15
20
41
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55680--55731
6
8.7
6
80
16
54
61
0
21
17
1.34
56337--56394
29
2.0
29
86
6
82
46
24
15
13
1.82
56849--56879
2
15.5
2
93
0
53
45
0
3
51
1.17

Tables:   1

The End!