Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009716.1 Corchorus capsularis cultivar CVL-1 contig09737, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57961

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1017--1091
38
1.9
39
83
2
98
38
17
24
20
1.93
1083--1118
18
1.9
18
88
5
54
66
8
13
11
1.44
1552--1583
2
16.5
2
93
6
57
50
0
0
50
1.00
2434--2991
49
11.4
49
86
3
734
31
13
31
23
1.93
2434--2991
148
3.8
146
88
3
750
31
13
31
23
1.93
6734--6784
23
2.2
23
82
6
59
9
19
11
58
1.60
6740--6784
23
1.9
24
86
4
65
8
15
13
62
1.54
7795--8139
177
1.9
178
81
4
410
31
15
17
35
1.91
8650--8772
52
2.4
52
84
0
165
35
13
17
33
1.89
16497--16545
19
2.6
19
83
6
64
71
20
0
8
1.11
24479--24520
6
6.8
6
84
15
59
33
16
0
50
1.46
25810--25904
47
2.0
47
100
0
190
34
6
2
56
1.36
26281--26441
60
2.7
61
90
4
247
33
18
20
27
1.96
26341--26442
31
3.4
31
66
15
95
35
19
20
24
1.96
26475--26639
31
5.5
31
69
16
130
27
20
19
33
1.96
26475--26635
60
2.7
60
92
0
259
26
19
19
34
1.96
30307--30360
20
2.8
20
88
8
76
38
22
9
29
1.85
34276--34366
20
4.6
20
71
15
73
52
0
2
45
1.13
35096--35135
20
2.0
21
85
5
55
22
17
22
37
1.94
35301--35714
206
2.0
206
100
0
828
46
10
8
35
1.68
38128--38192
3
22.0
3
73
9
53
3
41
0
55
1.15
38143--38190
6
8.0
6
88
0
60
0
45
0
54
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43788--43812
10
2.5
10
100
0
50
32
8
16
44
1.76
44127--44202
31
2.5
31
91
8
120
32
9
23
34
1.87
45040--45091
25
2.1
25
82
7
61
23
19
30
26
1.98
45621--45661
19
2.3
18
84
12
57
34
2
0
63
1.08
48066--48100
16
2.1
18
89
10
56
60
11
20
8
1.57
52066--52090
11
2.3
11
100
0
50
36
0
28
36
1.58
56053--56098
21
2.2
21
85
14
60
82
4
10
2
0.89
57761--57925
31
5.5
31
70
16
148
32
20
20
26
1.97
57766--57929
60
2.7
60
93
0
292
32
20
20
26
1.97

Tables:   1

The End!