Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009717.1 Corchorus capsularis cultivar CVL-1 contig09738, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26097

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1528--1569
22
1.9
22
85
9
59
28
11
4
54
1.57
1714--1795
22
3.7
23
81
12
84
37
10
13
37
1.80
1762--1841
23
3.5
23
81
1
81
40
16
8
35
1.79
1757--1863
45
2.4
45
76
9
110
37
15
9
37
1.80
1868--2048
22
8.5
22
76
8
160
32
16
9
41
1.81
1736--2007
44
6.3
43
74
13
175
36
14
9
39
1.79
1975--2048
19
3.7
20
85
7
96
31
16
10
41
1.82
2129--2383
22
11.6
22
69
15
127
33
15
10
40
1.81
2406--2545
22
6.4
21
71
14
88
36
18
7
37
1.80
3363--3440
38
2.1
37
85
2
102
58
11
16
12
1.62
3657--3690
2
16.5
2
87
6
50
47
0
5
47
1.26
4048--4082
6
5.8
6
89
0
52
65
0
0
34
0.93
4270--4302
2
16.5
2
100
0
66
48
0
0
51
1.00
14037--14081
3
14.0
3
86
9
54
60
0
2
37
1.09
15960--15998
20
2.0
20
90
10
62
23
0
0
76
0.78
19127--19158
15
2.1
16
94
5
57
37
0
3
59
1.13
25774--25817
21
2.1
21
91
0
70
20
43
6
29
1.78
25892--25946
25
2.3
25
90
6
87
32
21
0
45
1.52
25956--26023
26
2.6
26
95
0
118
52
11
1
33
1.47
25956--26023
15
5.1
15
70
26
62
52
11
1
33
1.47

Tables:   1

The End!