Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01009718.1 Corchorus capsularis cultivar CVL-1 contig09739, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 88210
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Found at i:740 original size:21 final size:21
Alignment explanation
Indices: 714--755 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
704 GTTCTTCTTT
714 AAGGTTACTAAAAAA-GTTATA
1 AAGGTTA-TAAAAAATGTTATA
735 AAGGTTATAAAAAATGTTATA
1 AAGGTTATAAAAAATGTTATA
756 GTATTATAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.52, C:0.02, G:0.14, T:0.31
Consensus pattern (21 bp):
AAGGTTATAAAAAATGTTATA
Found at i:1075 original size:21 final size:20
Alignment explanation
Indices: 1041--1084 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
1031 TCTTGTAATC
* *
1041 TAAAATTACTAAAAGAGTTA
1 TAAAATTACTAAAACAGCTA
*
1061 TAAAAGTTATTAAAACAGCTA
1 TAAAA-TTACTAAAACAGCTA
1082 TAA
1 TAA
1085 TGCTTTCCAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.55, C:0.07, G:0.09, T:0.30
Consensus pattern (20 bp):
TAAAATTACTAAAACAGCTA
Found at i:1230 original size:6 final size:7
Alignment explanation
Indices: 1211--1236 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
1201 ATAACTTTTT
1211 ATAAAAA
1 ATAAAAA
1218 ATAAAAA
1 ATAAAAA
1225 ATAAAAA
1 ATAAAAA
1232 ATAAA
1 ATAAA
1237 GGTTAAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (7 bp):
ATAAAAA
Found at i:2953 original size:3 final size:3
Alignment explanation
Indices: 2933--2969 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
2923 TCAACAAATT
* *
2933 TTA TTC TTA TTC TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
2970 ATTTTGATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:3222 original size:21 final size:21
Alignment explanation
Indices: 3198--3243 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
3188 CTCTACCAAA
*
3198 CTAATGAATGATCTATGTGAT
1 CTAATGAATGATCAATGTGAT
*
3219 CTAATGGATGATCAATGTGAT
1 CTAATGAATGATCAATGTGAT
3240 CTAA
1 CTAA
3244 AATAACATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.35, C:0.11, G:0.20, T:0.35
Consensus pattern (21 bp):
CTAATGAATGATCAATGTGAT
Found at i:3699 original size:3 final size:3
Alignment explanation
Indices: 3685--3745 Score: 104
Period size: 3 Copynumber: 20.3 Consensus size: 3
3675 TCAACAAATT
*
3685 TTA TTC TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
3733 TTA TTA TGA TTA T
1 TTA TTA TTA TTA T
3746 ATTTTGATAT
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:3827 original size:776 final size:793
Alignment explanation
Indices: 2933--4527 Score: 2527
Period size: 827 Copynumber: 2.0 Consensus size: 793
2923 TCAACAAATT
* * *
2933 TTATTCTTATTCTTATTATTATTATTATTATTATTATATTTTGATATCACTAATTTTACTATTTC
1 TTATTATTATTATTATTATTATTATTATTATGATTATATTTTGATATCACTAATTTTACTATTTC
2998 AATCTCTCCAAAACAAATCTCACAATTCAACTAAACACATTCGGACCTGTAAGTCAAATTTGTAT
66 AATCTCTCCAAAACAAATCTCACAATTCAACTAAACACATTCGGACCTGTAAGTCAAATTTGTAT
*
3063 AAGGCTATTTTAAACTTAATGCAACATGAGGAAGTATAAAATTAGGTGTACAAAATTGGTTCCTA
131 AAGACTATTTTAAACTTAATGCAACATGAGGAAGTATAAAATTAGGTGTACAAAATTGGTTCCTA
*
3128 TAA-T-T-A-C-TATG-CGTAT-C-TTTG-G-CA-AG-T-T-GA-A-GC-A-AAATT-AAAATT-
196 TAATTATAATCATATGTCCTATCCTTTTGAGACAGAGATATAGATATGCGAGAAATTAAAAATTA
* *
3173 -GA-T-ATCTAGCTATTACTCTACCAAACTAATGAATGATCTATGTGATCTAATGGATGATCAAT
261 AAATTGAT-TAGCTATTACTCTACCAAACTAATGAATGATCTATGTGATCTAATGAATGATCAAT
3235 GTGATCTAAAATAACATAGCAAAAAGGTAATAATTTTATTTAAGGTTACAAACAAAAAATCTATA
325 GTGATCTAAAATAACATAGCAAAAAGGTAATAATTTTATTTAAGGTTACAAAC-AAAAATCTATA
3300 ATGATCAAAAAAAGGCATAATACTACTATGAACTAATTTAATAACCTTACATTCTTAGTAATTTT
389 ATGATCAAAAAAAGGCATAATACTACTATGAACTAATTTAATAACCTTACATTCTTAGTAATTTT
3365 GGTTATCAAATTTCTCATTTATGGTTTCTAATTAGAAAGCTAAACTATAGAATTATCAAGAAATT
454 GGTTATCAAATTTCTCATTTATGGTTTCTAATTAGAAAGCTAAACTATAGAATTATCAAGAAATT
*
3430 TTAGCAACCTTACATGCTTAGTAACATTATCAATGGTGAATGTTATTAATTTTTTAATCTAAGAT
519 CTAGCAACCTTACATGCTTAGTAACATTATCAATGGTGAATGTTATTAATTTTTTAATCTAAGAT
* *
3495 TACTAAAAAAGTTGTAGTGGATAATTTAAGAGATATATAGGGTTAAAAAATAGTGGGTTTAATTT
584 TACT-AAAAAGTTGTAGTGGATAATTTAAGAGATATATAGGGTTAAAAAATAGTGAGCTTAATTT
3560 ATTGATATATAGATTGATGGTCAGTTAAAGTTCTTGTATATAGAATTAGGAGTTTAATTTTATTA
648 ATTGATATATAGATTGATGGTCAGTTAAAGTTCTTGTATATAGAATTAGGAGTTTAATTTTATTA
* *
3625 TCTTATTCTATGTGTATATGTTAATCAATCTTAGTGTTTCATGAATA-TTTTCAACAAATTTTAT
713 TCTTATTCTA--T-CATATGTTAATCAATCTTAGTGTTTCATAAATACTTTT-AACAAATTTTAT
*
3689 TCTTATTATTATTATTATTA
774 TCTCATTATTATTATTATTA
3709 TTATTATTATTATTATTATTATTATTATTATGATTATATTTTGATATCACTAATTTTACTATTTC
1 TTATTATTATTATTATTATTATTATTATTATGATTATATTTTGATATCACTAATTTTACTATTTC
3774 AATCTCTCCAAAACAAATCTCACAATTCAACTAAACACATTCGGACCTGTAAGTCAAATTTGTAT
66 AATCTCTCCAAAACAAATCTCACAATTCAACTAAACACATTCGGACCTGTAAGTCAAATTTGTAT
3839 AAGACTATTTTAAACTTAATGCAACATGAGGAAGTATAAAATTAGGTGTACAAAATTGGTTCCTA
131 AAGACTATTTTAAACTTAATGCAACATGAGGAAGTATAAAATTAGGTGTACAAAATTGGTTCCTA
* * *
3904 TAATTACTAATTCATATGTCCTTTCCTTTTTTTGATGATAGAGAAATTAAATTTATATATATGCG
196 TAATTA-TAA-TCATATGTCCTATCC---TTTTGA-GACAGAG-------A--TATAGATATGCG
*
3969 TATCTTGGGCAAGTTGAAGCAAAATTAAAATTGATATCTAGCTATTACTCTACCAAACTAATGAA
246 -A------G-AAATT--A--AAAATTAAAATTG--AT-TAGCTATTACTCTACCAAACTAATGAA
4034 TGATCTATGTGATCTAATGAATGATCAATGTGATCTAAAATAACATAGCAAAAAGGTAATAATTT
296 TGATCTATGTGATCTAATGAATGATCAATGTGATCTAAAATAACATAGCAAAAAGGTAATAATTT
4099 TATTTAAGGTTACAAACAAAAATCTATAATGATCAAAAAAAGGCATAATACTACTATGAACTAAT
361 TATTTAAGGTTACAAACAAAAATCTATAATGATCAAAAAAAGGCATAATACTACTATGAACTAAT
4164 TTAATAACCTTACATTCTTAGTAATTTTGGTTATCAAATTTCTCATTTATGGTTTCTAATTAGAA
426 TTAATAACCTTACATTCTTAGTAATTTTGGTTATCAAATTTCTCATTTATGGTTTCTAATTAGAA
4229 AGCTAAACTATAGAATTATCAAGAAATTCTAGCAACCTTACATGCTTAGTAACATTATCAATGGT
491 AGCTAAACTATAGAATTATCAAGAAATTCTAGCAACCTTACATGCTTAGTAACATTATCAATGGT
4294 GAATGTTATTAATTTTTTAATCTAAGATTACTAAAAAGTTGTAGTGGATAATTTAAGAGATATAT
556 GAATGTTATTAATTTTTTAATCTAAGATTACTAAAAAGTTGTAGTGGATAATTTAAGAGATATAT
4359 AGGGTTAAAAAATAGTGAGCTTAATTTATTGATATATAGATTGATGGTCAGTTAAAGTTCTTGTA
621 AGGGTTAAAAAATAGTGAGCTTAATTTATTGATATATAGATTGATGGTCAGTTAAAGTTCTTGTA
4424 TATAGAATTAGGAGTTTAATTTTATTATCTTATTCTATCATATGTTAATCAATCTTAGTGTTTCA
686 TATAGAATTAGGAGTTTAATTTTATTATCTTATTCTATCATATGTTAATCAATCTTAGTGTTTCA
*
4489 TAAATACTTTTAACAAATTTTATTCTCATTATTGTTATT
751 TAAATACTTTTAACAAATTTTATTCTCATTATTATTATT
4528 CTAATGTCAC
Statistics
Matches: 748, Mismatches: 18, Indels: 59
0.91 0.02 0.07
Matches are distributed among these distances:
776 194 0.26
777 1 0.00
779 1 0.00
780 1 0.00
782 1 0.00
783 4 0.01
784 3 0.00
785 1 0.00
789 4 0.01
791 1 0.00
792 1 0.00
793 2 0.00
803 1 0.00
804 1 0.00
805 1 0.00
806 1 0.00
807 2 0.00
809 1 0.00
817 4 0.01
822 6 0.01
823 57 0.08
824 6 0.01
825 1 0.00
826 133 0.18
827 209 0.28
828 111 0.15
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39
Consensus pattern (793 bp):
TTATTATTATTATTATTATTATTATTATTATGATTATATTTTGATATCACTAATTTTACTATTTC
AATCTCTCCAAAACAAATCTCACAATTCAACTAAACACATTCGGACCTGTAAGTCAAATTTGTAT
AAGACTATTTTAAACTTAATGCAACATGAGGAAGTATAAAATTAGGTGTACAAAATTGGTTCCTA
TAATTATAATCATATGTCCTATCCTTTTGAGACAGAGATATAGATATGCGAGAAATTAAAAATTA
AAATTGATTAGCTATTACTCTACCAAACTAATGAATGATCTATGTGATCTAATGAATGATCAATG
TGATCTAAAATAACATAGCAAAAAGGTAATAATTTTATTTAAGGTTACAAACAAAAATCTATAAT
GATCAAAAAAAGGCATAATACTACTATGAACTAATTTAATAACCTTACATTCTTAGTAATTTTGG
TTATCAAATTTCTCATTTATGGTTTCTAATTAGAAAGCTAAACTATAGAATTATCAAGAAATTCT
AGCAACCTTACATGCTTAGTAACATTATCAATGGTGAATGTTATTAATTTTTTAATCTAAGATTA
CTAAAAAGTTGTAGTGGATAATTTAAGAGATATATAGGGTTAAAAAATAGTGAGCTTAATTTATT
GATATATAGATTGATGGTCAGTTAAAGTTCTTGTATATAGAATTAGGAGTTTAATTTTATTATCT
TATTCTATCATATGTTAATCAATCTTAGTGTTTCATAAATACTTTTAACAAATTTTATTCTCATT
ATTATTATTATTA
Found at i:4050 original size:21 final size:21
Alignment explanation
Indices: 4026--4071 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
4016 CTCTACCAAA
*
4026 CTAATGAATGATCTATGTGAT
1 CTAATGAATGATCAATGTGAT
4047 CTAATGAATGATCAATGTGAT
1 CTAATGAATGATCAATGTGAT
4068 CTAA
1 CTAA
4072 AATAACATAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (21 bp):
CTAATGAATGATCAATGTGAT
Found at i:4875 original size:23 final size:21
Alignment explanation
Indices: 4817--4885 Score: 104
Period size: 21 Copynumber: 3.2 Consensus size: 21
4807 TAAAGATACG
4817 TATAT-ATAGAAATTAAAATT
1 TATATGATAGAAATTAAAATT
4837 TATATGATAGAAATTAAAATT
1 TATATGATAGAAATTAAAATT
4858 TATATGATAGAGAAATTAAAATT
1 TATATGAT--AGAAATTAAAATT
*
4881 GATAT
1 TATAT
4886 CTCGCTATTA
Statistics
Matches: 45, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
20 5 0.11
21 23 0.51
23 17 0.38
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.38
Consensus pattern (21 bp):
TATATGATAGAAATTAAAATT
Found at i:5920 original size:29 final size:28
Alignment explanation
Indices: 5876--5950 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 28
5866 TTATTTTACT
* * *
5876 CAAATAAGCCCCTATTTTCATATTGA-AC
1 CAAATAAACCCTTATTTTCAAATT-ACAC
* *
5904 CTAAATAAACTCTTATTTTTAAATTACAC
1 C-AAATAAACCCTTATTTTCAAATTACAC
5933 CAAATAAACCCTTATTTT
1 CAAATAAACCCTTATTTT
5951 TTCACTATCT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
28 18 0.46
29 21 0.54
ACGTcount: A:0.39, C:0.21, G:0.03, T:0.37
Consensus pattern (28 bp):
CAAATAAACCCTTATTTTCAAATTACAC
Found at i:13650 original size:12 final size:14
Alignment explanation
Indices: 13616--13652 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
13606 GAAGGAGCAG
*
13616 GAGAGAGAGAAAAC
1 GAGACAGAGAAAAC
13630 GAGACAGAGAAAAC
1 GAGACAGAGAAAAC
13644 G-GA-AGAGAA
1 GAGACAGAGAA
13653 GAAGGAGCGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 6 0.27
13 2 0.09
14 14 0.64
ACGTcount: A:0.57, C:0.08, G:0.35, T:0.00
Consensus pattern (14 bp):
GAGACAGAGAAAAC
Found at i:15802 original size:10 final size:10
Alignment explanation
Indices: 15771--15808 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
15761 CTACAGGTAG
15771 TTTCTTTTTC
1 TTTCTTTTTC
*
15781 TTT-TTTTCC
1 TTTCTTTTTC
15790 TTTCTTTTTC
1 TTTCTTTTTC
15800 TTTCTTTTT
1 TTTCTTTTT
15809 GGCCAATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 8 0.32
10 17 0.68
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (10 bp):
TTTCTTTTTC
Found at i:17084 original size:18 final size:18
Alignment explanation
Indices: 17061--17097 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
17051 GTGATTTATG
17061 ATAGTTTTTATTTTTTTT
1 ATAGTTTTTATTTTTTTT
17079 ATAGTTTTTATTTTTTTT
1 ATAGTTTTTATTTTTTTT
17097 A
1 A
17098 AAACATGTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.19, C:0.00, G:0.05, T:0.76
Consensus pattern (18 bp):
ATAGTTTTTATTTTTTTT
Found at i:20596 original size:8 final size:8
Alignment explanation
Indices: 20583--20610 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
20573 ATTAGTAGAT
20583 AAAATAAA
1 AAAATAAA
20591 AAAATAAA
1 AAAATAAA
20599 AAAATAAA
1 AAAATAAA
20607 AAAA
1 AAAA
20611 AAATAATTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAATAAA
Found at i:24960 original size:14 final size:14
Alignment explanation
Indices: 24941--24967 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
24931 TGGTAGAATG
24941 TTTTTTTTATCTTT
1 TTTTTTTTATCTTT
24955 TTTTTTTTATCTT
1 TTTTTTTTATCTT
24968 AATTTTTGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.07, G:0.00, T:0.85
Consensus pattern (14 bp):
TTTTTTTTATCTTT
Found at i:37519 original size:22 final size:23
Alignment explanation
Indices: 37491--37536 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
37481 AGAATTTCAT
37491 ATTATT-CGATTTTCTCGAGAAA
1 ATTATTCCGATTTTCTCGAGAAA
*
37513 ATTATTCCGGTTTTCTCGAGAAA
1 ATTATTCCGATTTTCTCGAGAAA
37536 A
1 A
37537 AAAAAAGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.39
Consensus pattern (23 bp):
ATTATTCCGATTTTCTCGAGAAA
Found at i:39709 original size:14 final size:15
Alignment explanation
Indices: 39692--39720 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
39682 GATTTAAAGA
39692 TGCATATTTA-TTTT
1 TGCATATTTAGTTTT
39706 TGCATATTTAGTTTT
1 TGCATATTTAGTTTT
39721 CAATTAAGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.21, C:0.07, G:0.10, T:0.62
Consensus pattern (15 bp):
TGCATATTTAGTTTT
Found at i:42100 original size:21 final size:20
Alignment explanation
Indices: 42074--42114 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
42064 TGAAAGGCCA
*
42074 TTTTTTAAGCCACATAGACC
1 TTTTTTTAGCCACATAGACC
*
42094 TTTTTTTAGCCACTTAGACC
1 TTTTTTTAGCCACATAGACC
42114 T
1 T
42115 GATTTAACCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.24, C:0.24, G:0.10, T:0.41
Consensus pattern (20 bp):
TTTTTTTAGCCACATAGACC
Found at i:42192 original size:12 final size:11
Alignment explanation
Indices: 42170--42204 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
42160 AGGTGGCTTT
42170 TTAAAAAAAAA
1 TTAAAAAAAAA
*
42181 TTGAACAAAAAA
1 TT-AAAAAAAAA
42193 TTAAAAAAAAA
1 TTAAAAAAAAA
42204 T
1 T
42205 CATTTTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.20
Consensus pattern (11 bp):
TTAAAAAAAAA
Found at i:44001 original size:21 final size:22
Alignment explanation
Indices: 43955--44003 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
43945 CTCGGTCTCT
*
43955 ACAAACCAATCATCACATCTAC
1 ACAAACCAAACATCACATCTAC
43977 -CAAACCAAACAATCACA-C-AC
1 ACAAACCAAAC-ATCACATCTAC
43997 ACAAACC
1 ACAAACC
44004 CATAAGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
20 2 0.08
21 16 0.67
22 6 0.25
ACGTcount: A:0.51, C:0.39, G:0.00, T:0.10
Consensus pattern (22 bp):
ACAAACCAAACATCACATCTAC
Found at i:46332 original size:15 final size:15
Alignment explanation
Indices: 46312--46341 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
46302 AATTTATAAA
46312 TCTTTACCTGAGGTT
1 TCTTTACCTGAGGTT
46327 TCTTTACCTGAGGTT
1 TCTTTACCTGAGGTT
46342 CGGCTGCATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.20, G:0.20, T:0.47
Consensus pattern (15 bp):
TCTTTACCTGAGGTT
Found at i:49144 original size:11 final size:11
Alignment explanation
Indices: 49120--49154 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
49110 TTGACAGCGC
49120 AACAAAAACAA
1 AACAAAAACAA
* *
49131 AACGAAAACGA
1 AACAAAAACAA
49142 AACAAAAACAA
1 AACAAAAACAA
49153 AA
1 AA
49155 AACAGAAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.77, C:0.17, G:0.06, T:0.00
Consensus pattern (11 bp):
AACAAAAACAA
Found at i:50319 original size:31 final size:31
Alignment explanation
Indices: 50281--50412 Score: 140
Period size: 31 Copynumber: 4.3 Consensus size: 31
50271 AAAAAGTCGT
** *
50281 GCCACGTGTACCAAAAAGTGACATGTGTCAC
1 GCCACGTGTACCAAAAAGTGACACATGGCAC
* *
50312 GCCACGTGTACCAAAATGTGACACATGGCAT
1 GCCACGTGTACCAAAAAGTGACACATGGCAC
*
50343 ACCACGTGTACCAAAAAGTGACACATGGCATC
1 GCCACGTGTACCAAAAAGTGACACATGGCA-C
* ** ** *
50375 -CCACATGTTTCAAAAAGTGACATGTGGCAT
1 GCCACGTGTACCAAAAAGTGACACATGGCAC
50405 GCCACGTG
1 GCCACGTG
50413 CAAAAAAGGA
Statistics
Matches: 84, Mismatches: 15, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
31 84 1.00
ACGTcount: A:0.33, C:0.26, G:0.22, T:0.20
Consensus pattern (31 bp):
GCCACGTGTACCAAAAAGTGACACATGGCAC
Found at i:50389 original size:62 final size:62
Alignment explanation
Indices: 50282--50412 Score: 156
Period size: 62 Copynumber: 2.1 Consensus size: 62
50272 AAAAGTCGTG
** * * *
50282 CCACGTGTACCAAAAAGTGACATGTGTCACGCCACGTGTACCAAAATGTGACACATGGCATA
1 CCACGTGTACCAAAAAGTGACACATGGCACGCCACATGTACCAAAAAGTGACACATGGCATA
** ** *
50344 CCACGTGTACCAAAAAGTGACACATGGCATC-CCACATGTTTCAAAAAGTGACATGTGGCATG
1 CCACGTGTACCAAAAAGTGACACATGGCA-CGCCACATGTACCAAAAAGTGACACATGGCATA
50406 CCACGTG
1 CCACGTG
50413 CAAAAAAGGA
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
62 57 0.98
63 1 0.02
ACGTcount: A:0.33, C:0.26, G:0.21, T:0.20
Consensus pattern (62 bp):
CCACGTGTACCAAAAAGTGACACATGGCACGCCACATGTACCAAAAAGTGACACATGGCATA
Found at i:50774 original size:22 final size:22
Alignment explanation
Indices: 50749--51371 Score: 165
Period size: 22 Copynumber: 28.9 Consensus size: 22
50739 ATGATCCCAT
50749 TATGAAATTTTGATAACCTTCC
1 TATGAAATTTTGATAACCTTCC
* ** *
50771 TATGAAATTTTAATAACGATAC
1 TATGAAATTTTGATAACCTTCC
* ** * **
50793 TATGGAATTTCAAGAACCTTTT
1 TATGAAATTTTGATAACCTTCC
* ** *
50815 TAT-AATTTTTTTTAACCTTCT
1 TATGAAATTTTGATAACCTTCC
* * *
50836 TATGAAATTTGGTTAACCTCCC
1 TATGAAATTTTGATAACCTTCC
* * * *
50858 TAAGGAATTTT-AAAGACC-TCAA
1 TATGAAATTTTGATA-ACCTTC-C
50880 TATGAAATTTTGATAA-CTTCTC
1 TATGAAATTTTGATAACCTTC-C
* **
50902 AATGAAATTTTGATAACCAACAC
1 TATGAAATTTTGATAACCTTC-C
* *
50925 TATGAGATGTTGATAACC-TCC
1 TATGAAATTTTGATAACCTTCC
* * * **
50946 ATATGATATATTGATAACCCCATGT
1 -TATGAAATTTTGATAA--CCTTCC
* * * *
50971 TATAAAAATTTAAAAACC-TCC
1 TATGAAATTTTGATAACCTTCC
* * *
50992 ATATG-AATTGTT-AGTAATCGTAC
1 -TATGAAATT-TTGA-TAACCTTCC
* * *
51015 TCTGAAATTTTGATAATC-ACAC
1 TATGAAATTTTGATAACCTTC-C
*
51037 TATGAAATTGTGATAACC-TCGC
1 TATGAAATTTTGATAACCTTC-C
**
51059 TATGAAATTTTGATAAATTTTCC
1 TATGAAATTTTGAT-AACCTTCC
* *
51082 TATAAAATTTTGATAAACCTCCC
1 TATGAAATTTTGAT-AACCTTCC
* * *
51105 TATAAAATTTTGATAACTTTCT
1 TATGAAATTTTGATAACCTTCC
*
51127 TATGAAATCTTGATAA-----C
1 TATGAAATTTTGATAACCTTCC
* *
51144 TA-CAAATTTTGATAACCTCCC
1 TATGAAATTTTGATAACCTTCC
** *
51165 TATGATTTTTTGATAACC-TCAT
1 TATGAAATTTTGATAACCTTC-C
* * * *
51187 TACGAAATTTCGTTAATCTTCC
1 TATGAAATTTTGATAACCTTCC
* * * *
51209 TATGAAATTTTTATCTA-CATAC
1 TATGAAATTTTGAT-AACCTTCC
* **
51231 TATGAAATTTTGA-AAACTAAAC
1 TATGAAATTTTGATAACCT-TCC
*
51253 TATGAAATTTTGATATCC-TCC
1 TATGAAATTTTGATAACCTTCC
* * *
51274 -CTG-AATTTTGATATCC-TCA
1 TATGAAATTTTGATAACCTTCC
*
51293 T-TGAAATTTTGATTA-C-TCC
1 TATGAAATTTTGATAACCTTCC
* * *
51312 ATAATAAAAGTTTAATAACCTTCC
1 -T-ATGAAATTTTGATAACCTTCC
* * *
51336 --T--AA-TTTGGTAACCATAC
1 TATGAAATTTTGATAACCTTCC
51353 TATGAAATTTTGATAACCT
1 TATGAAATTTTGATAACCT
51372 CCCCAGAAAT
Statistics
Matches: 433, Mismatches: 125, Indels: 86
0.67 0.19 0.13
Matches are distributed among these distances:
16 11 0.03
17 12 0.03
18 2 0.00
19 21 0.05
20 14 0.03
21 31 0.07
22 255 0.59
23 69 0.16
24 17 0.04
25 1 0.00
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (22 bp):
TATGAAATTTTGATAACCTTCC
Found at i:51089 original size:23 final size:23
Alignment explanation
Indices: 51058--51142 Score: 100
Period size: 23 Copynumber: 3.7 Consensus size: 23
51048 GATAACCTCG
* *
51058 CTATGAAATTTTGATAAATTTTC
1 CTATAAAATTTTGATAAACTTTC
* *
51081 CTATAAAATTTTGATAAACCTCC
1 CTATAAAATTTTGATAAACTTTC
51104 CTATAAAATTTTGAT-AACTTTC
1 CTATAAAATTTTGATAAACTTTC
* * *
51126 TTATGAAATCTTGATAA
1 CTATAAAATTTTGATAA
51143 CTACAAATTT
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
22 17 0.33
23 35 0.67
ACGTcount: A:0.38, C:0.13, G:0.07, T:0.42
Consensus pattern (23 bp):
CTATAAAATTTTGATAAACTTTC
Found at i:51141 original size:45 final size:45
Alignment explanation
Indices: 51036--51142 Score: 128
Period size: 45 Copynumber: 2.4 Consensus size: 45
51026 GATAATCACA
* * *
51036 CTATGAAATTGTGAT-AACCTCGCTATGAAATTTTGATAAATTTTC
1 CTATGAAATT-TGATAAACCTCCCTATAAAATTTTGATAAACTTTC
*
51081 CTATAAAATTTTGATAAACCTCCCTATAAAATTTTGAT-AACTTTC
1 CTATGAAA-TTTGATAAACCTCCCTATAAAATTTTGATAAACTTTC
*
51126 TTATGAAATCTTGATAA
1 CTATGAAAT-TTGATAA
51143 CTACAAATTT
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
44 1 0.02
45 30 0.57
46 22 0.42
ACGTcount: A:0.36, C:0.14, G:0.09, T:0.40
Consensus pattern (45 bp):
CTATGAAATTTGATAAACCTCCCTATAAAATTTTGATAAACTTTC
Found at i:51302 original size:20 final size:20
Alignment explanation
Indices: 51255--51305 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
51245 AACTAAACTA
*
51255 TGAAATTTTGATATCCTCCC
1 TGAAATTTTGATATCCTCAC
*
51275 TG-AATTTTGATATCCTCAT
1 TGAAATTTTGATATCCTCAC
51294 TGAAATTTTGAT
1 TGAAATTTTGAT
51306 TACTCCATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 17 0.61
20 11 0.39
ACGTcount: A:0.27, C:0.16, G:0.12, T:0.45
Consensus pattern (20 bp):
TGAAATTTTGATATCCTCAC
Found at i:51590 original size:22 final size:22
Alignment explanation
Indices: 51386--51601 Score: 129
Period size: 22 Copynumber: 9.8 Consensus size: 22
51376 AGAAATACCA
51386 CTATGAAATTTTTG-TAATCA-T
1 CTATGAAA-TTTTGATAATCACT
* * * *
51407 GTTATGAAAATTTGATAACCTCT
1 -CTATGAAATTTTGATAATCACT
* * * * *
51430 TTATAAAATTTTGTTGATCCCT
1 CTATGAAATTTTGATAATCACT
* *
51452 CTATGAAATTCTAATAATCACAT
1 CTATGAAATTTTGATAATCAC-T
* * * *
51475 -TATGTAATTTTGATAACCTCG
1 CTATGAAATTTTGATAATCACT
* *
51496 CTTTGAAATTTTGATAA-CAACA
1 CTATGAAATTTTGATAATC-ACT
* **
51518 CTATAAAATTTTGATAATCTTT
1 CTATGAAATTTTGATAATCACT
51540 CTAT-AAATTTTGATAATCCGATCT
1 CTATGAAATTTTGATAAT-C-A-CT
*
51564 CTATGAAATTTCGATAATCACT
1 CTATGAAATTTTGATAATCACT
*
51586 CTATGAGA-TTTGATAA
1 CTATGAAATTTTGATAA
51602 CCTTCTATCG
Statistics
Matches: 147, Mismatches: 37, Indels: 21
0.72 0.18 0.10
Matches are distributed among these distances:
21 25 0.17
22 100 0.68
23 4 0.03
24 6 0.04
25 12 0.08
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (22 bp):
CTATGAAATTTTGATAATCACT
Found at i:51670 original size:22 final size:21
Alignment explanation
Indices: 51641--51694 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
51631 AAATTGAGAC
51641 TTTT-ATAACCTTCATATGAAA
1 TTTTGATAACCTTC-TATGAAA
** *
51662 TTTTGATAACCACGCTATAAAA
1 TTTTGATAACC-TTCTATGAAA
51684 TTTTGATAACC
1 TTTTGATAACC
51695 ACCCCATGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 4 0.14
22 23 0.82
23 1 0.04
ACGTcount: A:0.37, C:0.17, G:0.07, T:0.39
Consensus pattern (21 bp):
TTTTGATAACCTTCTATGAAA
Found at i:51706 original size:22 final size:22
Alignment explanation
Indices: 51656--51706 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
51646 TAACCTTCAT
* *
51656 ATGAAATTTTGATAACCACGCT
1 ATGAAATTTTGATAACCACCCC
*
51678 ATAAAATTTTGATAACCACCCC
1 ATGAAATTTTGATAACCACCCC
51700 ATGAAAT
1 ATGAAAT
51707 ATTTAATGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (22 bp):
ATGAAATTTTGATAACCACCCC
Found at i:51770 original size:22 final size:22
Alignment explanation
Indices: 51712--51770 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
51702 GAAATATTTA
*
51712 ATGAAATTTTGTTAACCACACT
1 ATGAAATTTTGATAACCACACT
* *
51734 ATGAAATTCTT-ATAACCTCGCT
1 ATGAAATT-TTGATAACCACACT
*
51756 ATGACATTTTGATAA
1 ATGAAATTTTGATAA
51771 TCTCTTTGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
21 2 0.06
22 27 0.87
23 2 0.06
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.37
Consensus pattern (22 bp):
ATGAAATTTTGATAACCACACT
Found at i:51909 original size:22 final size:22
Alignment explanation
Indices: 51806--51942 Score: 105
Period size: 22 Copynumber: 6.1 Consensus size: 22
51796 TTGTGATAAT
* **
51806 TAACCACCCTATGAAATTTCAA
1 TAACCATCCTATGAAATTTTGA
* * * * * *
51828 TAACTAACTTAAGAGATTTTAA
1 TAACCATCCTATGAAATTTTGA
*
51850 TAACCTGATCCTATGAAATTTTGG
1 TAACC--ATCCTATGAAATTTTGA
**
51874 TAACCAGACTATGAAATTTTGA
1 TAACCATCCTATGAAATTTTGA
* *
51896 TAACC-TCCTCATGAAATTATAA
1 TAACCATCCT-ATGAAATTTTGA
*
51918 TAACCATCTTATGAAATTTTGA
1 TAACCATCCTATGAAATTTTGA
51940 TAA
1 TAA
51943 TCACATAGAG
Statistics
Matches: 88, Mismatches: 23, Indels: 8
0.74 0.19 0.07
Matches are distributed among these distances:
21 2 0.02
22 67 0.76
23 3 0.03
24 16 0.18
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.34
Consensus pattern (22 bp):
TAACCATCCTATGAAATTTTGA
Found at i:52142 original size:19 final size:20
Alignment explanation
Indices: 52111--52153 Score: 54
Period size: 19 Copynumber: 2.1 Consensus size: 20
52101 TATTGACATT
52111 TAAAAATTGAAATT-AAAAG
1 TAAAAATTGAAATTAAAAAG
52130 TAAAATATT-AAATTCAAAAAG
1 TAAAA-ATTGAAATT-AAAAAG
52151 TAA
1 TAA
52154 TAGTAAAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
19 10 0.48
20 3 0.14
21 8 0.38
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.28
Consensus pattern (20 bp):
TAAAAATTGAAATTAAAAAG
Found at i:55733 original size:21 final size:21
Alignment explanation
Indices: 55688--55777 Score: 76
Period size: 21 Copynumber: 4.3 Consensus size: 21
55678 ACTCTTTGAA
* *
55688 TTACTGATCACCCTTT-ACTC
1 TTACTGATTACCATTTGACTC
55708 TTTACTGATTACCATTTGACTC
1 -TTACTGATTACCATTTGACTC
* *
55730 TTACTAATTATCACTTTG-CTC
1 TTACTGATTACCA-TTTGACTC
* * * *
55751 TTACTGGTTACTATTTTACTT
1 TTACTGATTACCATTTGACTC
55772 TTACTG
1 TTACTG
55778 GTTATCTTTT
Statistics
Matches: 56, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
20 3 0.05
21 45 0.80
22 8 0.14
ACGTcount: A:0.21, C:0.23, G:0.08, T:0.48
Consensus pattern (21 bp):
TTACTGATTACCATTTGACTC
Found at i:55778 original size:21 final size:20
Alignment explanation
Indices: 55751--55790 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
55741 CACTTTGCTC
55751 TTACTGGTTACTATTTTACTT
1 TTACTGGTTA-TATTTTACTT
*
55772 TTACTGGTTATCTTTTACT
1 TTACTGGTTATATTTTACT
55791 GATTACTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.17, C:0.15, G:0.10, T:0.57
Consensus pattern (20 bp):
TTACTGGTTATATTTTACTT
Found at i:55796 original size:21 final size:21
Alignment explanation
Indices: 55751--55797 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
55741 CACTTTGCTC
*
55751 TTACTGGTTACTATTTTACTT
1 TTACTGGTTACTATTTTACTA
*
55772 TTACTGGTTA-TCTTTTACTGA
1 TTACTGGTTACTATTTTACT-A
55793 TTACT
1 TTACT
55798 ATTTTACTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 8 0.35
21 15 0.65
ACGTcount: A:0.19, C:0.15, G:0.11, T:0.55
Consensus pattern (21 bp):
TTACTGGTTACTATTTTACTA
Found at i:55811 original size:22 final size:22
Alignment explanation
Indices: 55785--56184 Score: 173
Period size: 22 Copynumber: 18.5 Consensus size: 22
55775 CTGGTTATCT
55785 TTTACTGATTACTATTTTACTC
1 TTTACTGATTACTATTTTACTC
*
55807 TTTAC-G-----GATTTTACTC
1 TTTACTGATTACTATTTTACTC
* *
55823 TTTACTGATTACCT-TCTTACTT
1 TTTACTGATTA-CTATTTTACTC
*
55845 TTTACTGATTACCATTTTACTC
1 TTTACTGATTACTATTTTACTC
* *
55867 TTTTACTGATTACCATTTTCTGCTCC
1 -TTTACTGATTACTA-TTT-TACT-C
* *
55893 TTTTTTTACTGATTACTCTTTTACTT
1 ----TTTACTGATTACTATTTTACTC
* * * *
55919 TTTACTGATTGC-CTTTTGCTT
1 TTTACTGATTACTATTTTACTC
*
55940 TTTACTGATTACCT-TTTTA-TT
1 TTTACTGATTA-CTATTTTACTC
55961 TCTTACTGATTAGCT-TTTTACTC
1 T-TTACTGATTA-CTATTTTACTC
* *
55984 TTTACTGATCACCT-TTTCACTC
1 TTTACTGATTA-CTATTTTACTC
* *
56006 -TTACTGATTTC-CTTTTACT-
1 TTTACTGATTACTATTTTACTC
* *
56025 TCTTACTTATTACTTTTTTACTC
1 T-TTACTGATTACTATTTTACTC
*
56048 -TTACTGATTACTATTTTACTTTT
1 TTTACTGATTACTATTTTAC--TC
* * *
56071 TTTACTGACTATTATTTCACTC
1 TTTACTGATTACTATTTTACTC
* *
56093 TTGT--TGATTACCT-TCTTACTT
1 TT-TACTGATTA-CTATTTTACTC
* *
56114 TTTAATGATTAC-CTTTTACTC
1 TTTACTGATTACTATTTTACTC
* * * *
56135 -TTACTAACTACCATTTTACCC
1 TTTACTGATTACTATTTTACTC
* *
56156 TTT-CAGA-TACT-TTTTACTT
1 TTTACTGATTACTATTTTACTC
56175 TTTACTGATT
1 TTTACTGATT
56185 GCATGCTATT
Statistics
Matches: 290, Mismatches: 52, Indels: 73
0.70 0.13 0.18
Matches are distributed among these distances:
16 14 0.05
17 1 0.00
19 9 0.03
20 22 0.08
21 86 0.30
22 98 0.34
23 18 0.06
24 19 0.07
25 3 0.01
26 1 0.00
27 3 0.01
28 3 0.01
29 13 0.04
ACGTcount: A:0.19, C:0.21, G:0.06, T:0.55
Consensus pattern (22 bp):
TTTACTGATTACTATTTTACTC
Found at i:55819 original size:16 final size:16
Alignment explanation
Indices: 55798--55832 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
55788 ACTGATTACT
55798 ATTTTACTCTTTACGG
1 ATTTTACTCTTTACGG
*
55814 ATTTTACTCTTTACTG
1 ATTTTACTCTTTACGG
55830 ATT
1 ATT
55833 ACCTTCTTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.20, C:0.17, G:0.09, T:0.54
Consensus pattern (16 bp):
ATTTTACTCTTTACGG
Found at i:55848 original size:45 final size:46
Alignment explanation
Indices: 55793--56136 Score: 163
Period size: 43 Copynumber: 7.7 Consensus size: 46
55783 CTTTTACTGA
* *
55793 TTACTATTTTACTCTTTACGGATTTTACTC-TTTACTGATTACCTTC
1 TTACTATTTTACTCATTAC-CATTTTACTCTTTTACTGATTACCTTC
*
55839 TTACT-TTTTACTGATTACCATTTTACTCTTTTACTGATTACCATTTTC
1 TTACTATTTTACTCATTACCATTTTACTCTTTTACTGATTACC---TTC
* * * *
55887 TGCTCCTTTTTTTACTGATTACTC-TTTTACT-TTTTACTGATTGCCTT-
1 T--TAC-TATTTTACTCATTAC-CATTTTACTCTTTTACTGATTACCTTC
* * * * *
55934 TTGCT-TTTTACTGATTACCTTTTTA-T-TTCTTACTGATTAGCTTT
1 TTACTATTTTACTCATTACCATTTTACTCTT-TTACTGATTACCTTC
* * * *
55978 TTACT-CTTTACTGATCACC-TTTTCACTC--TTACTGATTTCCTT-
1 TTACTATTTTACTCATTACCATTTT-ACTCTTTTACTGATTACCTTC
* * ** *
56020 TTACT-TCTTACTTATTACTTTTTTACTC--TTACTGATTA-CTATT
1 TTACTATTTTACTCATTACCATTTTACTCTTTTACTGATTACCT-TC
* * * ** * *
56063 TTACTTTTTTTACTGACTATTATTTCACTCTTGT--TGATTACCTTC
1 TTAC-TATTTTACTCATTACCATTTTACTCTTTTACTGATTACCTTC
* *
56108 TTACT-TTTTAATGATTACC-TTTTACTCTT
1 TTACTATTTTACTCATTACCATTTTACTCTT
56137 ACTAACTACC
Statistics
Matches: 243, Mismatches: 32, Indels: 50
0.75 0.10 0.15
Matches are distributed among these distances:
41 2 0.01
42 41 0.17
43 64 0.26
44 29 0.12
45 55 0.23
46 7 0.03
47 2 0.01
48 6 0.02
50 2 0.01
51 14 0.06
52 20 0.08
53 1 0.00
ACGTcount: A:0.18, C:0.21, G:0.06, T:0.56
Consensus pattern (46 bp):
TTACTATTTTACTCATTACCATTTTACTCTTTTACTGATTACCTTC
Found at i:55934 original size:21 final size:21
Alignment explanation
Indices: 55895--56184 Score: 184
Period size: 21 Copynumber: 13.6 Consensus size: 21
55885 TCTGCTCCTT
55895 TTTTTACTGATTACTCTTTTAC
1 TTTTTACTGATTAC-CTTTTAC
* *
55917 TTTTTACTGATTGCCTTTTGC
1 TTTTTACTGATTACCTTTTAC
55938 TTTTTACTGATTACCTTTTTA-
1 TTTTTACTGATTACC-TTTTAC
*
55959 TTTCTTACTGATTAGCTTTTTAC
1 TTT-TTACTGATTA-CCTTTTAC
* *
55982 TCTTTACTGATCACCTTTTCAC
1 TTTTTACTGATTACCTTTT-AC
* *
56004 -TCTTACTGATTTCCTTTTAC
1 TTTTTACTGATTACCTTTTAC
* * *
56024 TTCTTACTTATTACTTTTTTAC
1 TTTTTACTGATTAC-CTTTTAC
* *
56046 -TCTTACTGATTACTATTTTAC
1 TTTTTACTGATTAC-CTTTTAC
* *
56067 TTTTTTTACTGACTA-TTATTTCAC
1 --TTTTTACTGATTACCT-TTT-AC
*
56091 TCTTGT--TGATTACCTTCTTAC
1 T-TTTTACTGATTACCTT-TTAC
*
56112 TTTTTAATGATTACCTTTTAC
1 TTTTTACTGATTACCTTTTAC
* * *
56133 -TCTTACTAACTACCATTTTAC
1 TTTTTACTGATTACC-TTTTAC
** * *
56154 CCTTT-CAGA-TACTTTTTAC
1 TTTTTACTGATTACCTTTTAC
56173 TTTTTACTGATT
1 TTTTTACTGATT
56185 GCATGCTATT
Statistics
Matches: 211, Mismatches: 36, Indels: 43
0.73 0.12 0.15
Matches are distributed among these distances:
19 9 0.04
20 21 0.10
21 94 0.45
22 66 0.31
23 9 0.04
24 12 0.06
ACGTcount: A:0.19, C:0.20, G:0.06, T:0.55
Consensus pattern (21 bp):
TTTTTACTGATTACCTTTTAC
Found at i:55958 original size:43 final size:42
Alignment explanation
Indices: 55895--56139 Score: 210
Period size: 43 Copynumber: 5.7 Consensus size: 42
55885 TCTGCTCCTT
* *
55895 TTTTTACTGATTA-CTCTTTTACTTTTTACTGATTGCCTTTTGC
1 TTTTTACTGATTACCT-TTTTAC-TCTTACTGATTGCCTTTTAC
* *
55938 TTTTTACTGATTACCTTTTTATTTCTTACTGATTAGCTTTTTAC
1 TTTTTACTGATTACCTTTTTA-CTCTTACTGATT-GCCTTTTAC
* * * *
55982 TCTTTACTGATCACCTTTTCACTCTTACTGATTTCCTTTTAC
1 TTTTTACTGATTACCTTTTTACTCTTACTGATTGCCTTTTAC
* * * * *
56024 TTCTTACTTATTACTTTTTTACTCTTACTGATTACTATTTTAC
1 TTTTTACTGATTACCTTTTTACTCTTACTGATTGC-CTTTTAC
* ** *
56067 TTTTTTTACTGACTA--TTATTTCACTCTTGTTGATTACCTTCTTAC
1 --TTTTTACTGATTACCTT-TTT-ACTCTTACTGATTGCCTT-TTAC
*
56112 TTTTTAATGATTACC-TTTTACTCTTACT
1 TTTTTACTGATTACCTTTTTACTCTTACT
56140 AACTACCATT
Statistics
Matches: 163, Mismatches: 28, Indels: 23
0.76 0.13 0.11
Matches are distributed among these distances:
42 42 0.26
43 61 0.37
44 33 0.20
45 27 0.17
ACGTcount: A:0.18, C:0.20, G:0.06, T:0.56
Consensus pattern (42 bp):
TTTTTACTGATTACCTTTTTACTCTTACTGATTGCCTTTTAC
Found at i:55990 original size:87 final size:85
Alignment explanation
Indices: 55897--56186 Score: 254
Period size: 87 Copynumber: 3.4 Consensus size: 85
55887 TGCTCCTTTT
* *
55897 TTTACTGATTACTCTTTTACTTTTTACTGATTGCCTTTTGCTTTTTACTGATTACCTTTTTATTT
1 TTTACTGATTACTCTTTTACTTTTTACTGATTGCCTTTTACTTTTTACTGATTACCTTTTTA-CT
55962 CTTACTGATTAGCTTTTTACTC
65 CTTACTGATTA-CTTTTTACTC
* * * * * *
55984 TTTACTGATCAC-CTTTTCAC-TCTTACTGATTTCCTTTTACTTCTTACTTATTACTTTTTTACT
1 TTTACTGATTACTCTTTT-ACTTTTTACTGATTGCCTTTTACTTTTTACTGATTACCTTTTTACT
*
56047 CTTACTGATTACTATTTTACTTTT
65 CTTACTGATTACT-TTTTAC--TC
* * * * * * *
56071 TTTACTGACTATTATTTCACTCTTGT--TGATTACCTTCTTACTTTTTAATGATTACC-TTTTAC
1 TTTACTGATTACTCTTTTACT-TTTTACTGATTGCCTT-TTACTTTTTACTGATTACCTTTTTAC
* * * *
56133 TCTTACTAACTACCATTTTACCC
64 TCTTACTGATTA-CTTTTTACTC
*
56156 TTT-CAGA-TACT-TTTTACTTTTTACTGATTGC
1 TTTACTGATTACTCTTTTACTTTTTACTGATTGC
56187 ATGCTATTCT
Statistics
Matches: 161, Mismatches: 31, Indels: 26
0.74 0.14 0.12
Matches are distributed among these distances:
81 3 0.02
82 6 0.04
83 9 0.06
84 5 0.03
85 21 0.13
86 40 0.25
87 56 0.35
88 19 0.12
89 2 0.01
ACGTcount: A:0.19, C:0.21, G:0.06, T:0.54
Consensus pattern (85 bp):
TTTACTGATTACTCTTTTACTTTTTACTGATTGCCTTTTACTTTTTACTGATTACCTTTTTACTC
TTACTGATTACTTTTTACTC
Found at i:62182 original size:20 final size:21
Alignment explanation
Indices: 62151--62191 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
62141 AGGTATCTTA
62151 TTATTTATTATTGTTATATAT
1 TTATTTATTATTGTTATATAT
*
62172 TTATTTA-TATTTTTATATAT
1 TTATTTATTATTGTTATATAT
62192 CACAGTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.68
Consensus pattern (21 bp):
TTATTTATTATTGTTATATAT
Found at i:63436 original size:3 final size:3
Alignment explanation
Indices: 63428--63466 Score: 60
Period size: 3 Copynumber: 12.3 Consensus size: 3
63418 TTCAACTATT
63428 ATA ATA ATA ATA ATA ATA ATA ATA ATAA ATA ATTA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA A-TA ATA A
63467 CAGGGACAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
3 28 0.82
4 6 0.18
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:65783 original size:16 final size:17
Alignment explanation
Indices: 65750--65784 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
65740 TATAATAAAC
65750 AAAACATTTAGAAAATT
1 AAAACATTTAGAAAATT
65767 AAAACATTTAG-AAATT
1 AAAACATTTAGAAAATT
65783 AA
1 AA
65785 CTATTGACAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.29
Consensus pattern (17 bp):
AAAACATTTAGAAAATT
Found at i:67574 original size:40 final size:40
Alignment explanation
Indices: 67513--67589 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
67503 CACGTCCCAC
* *
67513 TACTGTCCACAGGTGTACCCCTCACCATGGAGTCACCGAT
1 TACTGCCCACAGATGTACCCCTCACCATGGAGTCACCGAT
* *
67553 TACTGCCCACAGATGTGCCCCTCGCCATGGAGTCACC
1 TACTGCCCACAGATGTACCCCTCACCATGGAGTCACC
67590 AGGGTTAAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.21, C:0.38, G:0.21, T:0.21
Consensus pattern (40 bp):
TACTGCCCACAGATGTACCCCTCACCATGGAGTCACCGAT
Found at i:67932 original size:30 final size:31
Alignment explanation
Indices: 67896--67970 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
67886 AAAAAGAATT
* *
67896 AGAGTATCCTACTATTTTTTTTTGGC-TACA
1 AGAGTATCGTACTATTTTTTTTTGGCACACA
67926 AGAGTATCGTACT-TTTTTTTTTGGCAACACA
1 AGAGTATCGTACTATTTTTTTTTGGC-ACACA
67957 AGAGTATCGTACTA
1 AGAGTATCGTACTA
67971 AACTCTTCGA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 12 0.30
30 12 0.30
31 16 0.40
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (31 bp):
AGAGTATCGTACTATTTTTTTTTGGCACACA
Found at i:71199 original size:3 final size:3
Alignment explanation
Indices: 71191--71228 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
71181 TCAAAATTCC
71191 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
71229 ACTATATATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:72000 original size:3 final size:3
Alignment explanation
Indices: 71992--72016 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
71982 GTTAGCCCAC
71992 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
72017 CATCTATACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:77407 original size:17 final size:18
Alignment explanation
Indices: 77375--77412 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
77365 TCATTTAAGA
77375 AATATATTAAAAGTTTCT
1 AATATATTAAAAGTTTCT
*
77393 AATATATT-TAAGTTTCT
1 AATATATTAAAAGTTTCT
77410 AAT
1 AAT
77413 TAAAATAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.47
Consensus pattern (18 bp):
AATATATTAAAAGTTTCT
Found at i:78732 original size:29 final size:29
Alignment explanation
Indices: 78667--78747 Score: 108
Period size: 29 Copynumber: 2.7 Consensus size: 29
78657 GTTTAATACC
* *
78667 CAAATTAGCCCCTTAACTATCTATTTTGGGA
1 CAAATTGGCCCCTTAACT-T-TTTTTTGGGA
*
78698 TAAATTGGCCCCTTAACTTTTTTTTGGGA
1 CAAATTGGCCCCTTAACTTTTTTTTGGGA
*
78727 CAAATTGACCCCTTAACTTTT
1 CAAATTGGCCCCTTAACTTTT
78748 AAAAACGAGA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
29 28 0.62
30 1 0.02
31 16 0.36
ACGTcount: A:0.26, C:0.22, G:0.12, T:0.40
Consensus pattern (29 bp):
CAAATTGGCCCCTTAACTTTTTTTTGGGA
Found at i:80029 original size:102 final size:105
Alignment explanation
Indices: 79906--80189 Score: 379
Period size: 103 Copynumber: 2.7 Consensus size: 105
79896 ATTTTTCTAA
* ** * *
79906 CCTTAAAATAAAATTTTAATTTTAATCT-GGACTAAACTTAGTG-AATTAGTTATATATTTTATT
1 CCTTAAAATAAAAATAAAATTTTAATTTGGGGCTAAACTTAGTGAAATTAGTT-TATATTTTATT
79969 TCTAAAACCCTATAACAAT-ATTATTAATTATG-AATTCA-
65 TCTAAAACCCTATAACAATAATTATTAATTATGAAATTCAT
80007 CCTTTAAAATAAAAATAAAATTTTAATTTGGGGCTAAACTTAGTGAAATTA-TTT-T-TTTTATT
1 CC-TTAAAATAAAAATAAAATTTTAATTTGGGGCTAAACTTAGTGAAATTAGTTTATATTTTATT
* *
80069 TCTAAAACCC-ATTAACAATAAATTATTAATTTTGAAATTTAT
65 TCTAAAACCCTA-TAACAAT-AATTATTAATTATGAAATTCAT
80111 CCTTAAAATAAAAATAAAATTTTAATTTGGGGCTAAACTTAGTGAAATTAGTTTTATATTTTATT
1 CCTTAAAATAAAAATAAAATTTTAATTTGGGGCTAAACTTAGTGAAATTAG-TTTATATTTTATT
* *
80176 TATAAAACTCTATA
65 TCTAAAACCCTATA
80190 CTAAAAAACC
Statistics
Matches: 161, Mismatches: 9, Indels: 20
0.85 0.05 0.11
Matches are distributed among these distances:
99 1 0.01
100 24 0.15
101 3 0.02
102 35 0.22
103 69 0.43
104 7 0.04
105 3 0.02
106 1 0.01
107 17 0.11
108 1 0.01
ACGTcount: A:0.41, C:0.09, G:0.07, T:0.43
Consensus pattern (105 bp):
CCTTAAAATAAAAATAAAATTTTAATTTGGGGCTAAACTTAGTGAAATTAGTTTATATTTTATTT
CTAAAACCCTATAACAATAATTATTAATTATGAAATTCAT
Found at i:80895 original size:5 final size:5
Alignment explanation
Indices: 80885--80915 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
80875 GGGATACCCA
80885 TTTCC TTTCC TTTCC TTTCC TTTTCC TTTCC
1 TTTCC TTTCC TTTCC TTTCC -TTTCC TTTCC
80916 CTCCTCCACC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (5 bp):
TTTCC
Found at i:84474 original size:439 final size:432
Alignment explanation
Indices: 83652--84963 Score: 1384
Period size: 440 Copynumber: 3.0 Consensus size: 432
83642 AAATTTTGTG
* * *
83652 ATTTAATATCGTATAATTTTTTATCCATATGTCCGATTGAAGTTATTAAAGTGTCGGTTAGAAGG
1 ATTTAATATCGTATAATTTTTTGTCCACATGTCCGATTGAAGTTATTAAA-TGTCGGTTAAAAGG
*
83717 TTATTGAATGATTTACGACTTTCATGAAGGATCCGAAAGTTAAATTTGATCTATGAGTTTCATGA
65 TTATTGAATGATTTACGACTTTCATGAAGGATCCGAAAG-TAAATTTGATCTACGAGTTTCATGA
* * * * * *
83782 AGGGCTCAAAAGGGAGTTTATATGTTCAATATCTCCATTAACAAACATTTTTTT-GTTGGATTAT
129 AGGGTTCAAAAGGGAATTTTTATGTTCAAAATATCCATTAACAAACATTTTTTTATTTGGATTAT
* * * * * * * * *
83846 TTATCTAATGATCCTCATACTTTTATACTTTATGTTATTTATTCCTTTTAC-GATTATAGGTTGG
194 TTATCAAATGACCCTCATACTTTTCTACTTTATATTACTTAGTCC-TTTACAAATTCTATGTT--
* * * * * * * *
83910 ACGATTTGACGCGTTCACATTTATTTTTGTATTTTTTTCCTATTTGTCCGATTAAGGTGATTCAA
256 A--ATCTAACG-TTTAAGATTTATTTTTTTATTTTTTTTCTATTTGTCCAATTAAGGTGATTCAA
* * * *
83975 GTGTCTATTAAAAGGTAATTTCATGATCTACAATTTTTAT-AAGAATTCAAAAGCCAATTTTAAT
318 GTGTCTATTAAAAGGTAATTTCATGATCTACAACTTTCATGAAGGACTCAAAAG-CAATTTTAAT
*
84039 GTTCTAATTCTAAAAAATGCTTCCGAAATTTTGTGGTTTTGATTGCCGGTCA
382 GTT-TAATTCTAAAAAATGCTTCCGAAATTTTGTGGTTTCGATTGCCGGTCA
* * * *
84091 ATTTAATATTGTATAATTTTTTGTCCACATGTCCAATTGAAGTTATTGAAATGTCGATCAAAAGG
1 ATTTAATATCGTATAATTTTTTGTCCACATGTCCGATTGAAGTTATT-AAATGTCGGTTAAAAGG
* *
84156 TTATTGCATGATTTACGACTTTCATGAAGGATCCGAAAGCTAAATTTGATTTACGAGTTTCATGA
65 TTATTGAATGATTTACGACTTTCATGAAGGATCCGAAAG-TAAATTTGATCTACGAGTTTCATGA
*
84221 AGGGTTCAAAAGGGAATTTTTATGTTCAAAATTTCCATTAACAAACATTTTTTTATTTGGATTAT
129 AGGGTTCAAAAGGGAATTTTTATGTTCAAAATATCCATTAACAAACATTTTTTTATTTGGATTAT
* * *
84286 TTATCAAATGACCCTCATATTTTTCTACTTTATACTACTTAGTCCTTTACAAATTCTATCTTAAT
194 TTATCAAATGACCCTCATACTTTTCTACTTTATATTACTTAGTCCTTTACAAATTCTATGTTAAT
* *
84351 CTAACGTTTAAGATTTATTTTTTTTTTATTTTTTGTTCTATTTGTCCAATTAAGTTGATTCATGT
259 CTAACGTTTAAGATTTA---TTTTTTTATTTTTT-TTCTATTTGTCCAATTAAGGTGATTCAAGT
*
84416 GTCTATTAAAAGGTAATTTCATGATCTACAACTTTCATGAAGGACTCAAAAGCAATTTTTTATGT
320 GTCTATTAAAAGGTAATTTCATGATCTACAACTTTCATGAAGGACTCAAAAGCAA-TTTTAATG-
* * * * ** *
84481 TTTAATTC-AAAAAATTGCTTCCTAAATTTGGTCGTTTCAATTGTTGGTCT
383 TTTAATTCTAAAAAA-TGCTTCCGAAATTTTGTGGTTTCGATTGCCGGTCA
* * * * *
84531 ATTTAATATCATATAA-TTTTCGATCTACATGTCCGATTAAAGTTATTCAAGTGTCGGTTAAAAG
1 ATTTAATATCGTATAATTTTTTG-TCCACATGTCCGATTGAAGTTATT-AAATGTCGGTTAAAAG
* ** * * * * *
84595 GTTATTGTATGATACATGACCTTCATGAAGAACCCGAAAGTTAATTTGATCTACGAGTTTCATGA
64 GTTATTGAATGATTTACGACTTTCATGAAGGATCCGAAAGTAAATTTGATCTACGAGTTTCATGA
* * * * * * **
84660 AGGGTTCAAAAGAGAAATTTTATAT-TTTAAGATATCCATTAAGAAATATTTTCTTATTTAAATT
129 AGGGTTCAAAAG-GGAATTTT-TATGTTCAAAATATCCATTAACAAACATTTTTTTATTTGGATT
* * * *
84724 AGTTATCAAATGACCGTCATACTTTTCTATTTTATATTTTATGTTACTTAGTTCTTTACAAATTC
192 ATTTATCAAATGACCCTCATACTTTTCTA-CTT-TA---TA--TTACTTAGTCCTTTACAAATTC
* * * * * * * * *
84789 TATGTCACTC-AA--TTTAGCGCTTCA-TTTTTTCTCTTTATTCTATTTGTCCAATTAAGGTAAT
250 TATGTTAATCTAACGTTTA-AGATTTATTTTTTTATTTTTTTTCTATTTGTCCAATTAAGGTGAT
* * * * * *
84850 TCAGGTATCTATTAAAAAGTAATTTTATGATCTACAACTTTCATGAAAGACTCAAAAGCTCATTT
314 TCAAGTGTCTATTAAAAGGTAATTTCATGATCTACAACTTTCATGAAGGACTCAAAAGC-AATTT
* * ** *
84915 TCATGTTTCAATTCTAAAAAATACTTTTGAAATTTTGTGATTTCGATTG
378 TAATGTTT-AATTCTAAAAAATGCTTCCGAAATTTTGTGGTTTCGATTG
84964 ACAATCTATT
Statistics
Matches: 736, Mismatches: 112, Indels: 49
0.82 0.12 0.05
Matches are distributed among these distances:
435 8 0.01
436 6 0.01
438 14 0.02
439 283 0.38
440 360 0.49
441 24 0.03
442 2 0.00
444 4 0.01
445 6 0.01
446 2 0.00
447 27 0.04
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.43
Consensus pattern (432 bp):
ATTTAATATCGTATAATTTTTTGTCCACATGTCCGATTGAAGTTATTAAATGTCGGTTAAAAGGT
TATTGAATGATTTACGACTTTCATGAAGGATCCGAAAGTAAATTTGATCTACGAGTTTCATGAAG
GGTTCAAAAGGGAATTTTTATGTTCAAAATATCCATTAACAAACATTTTTTTATTTGGATTATTT
ATCAAATGACCCTCATACTTTTCTACTTTATATTACTTAGTCCTTTACAAATTCTATGTTAATCT
AACGTTTAAGATTTATTTTTTTATTTTTTTTCTATTTGTCCAATTAAGGTGATTCAAGTGTCTAT
TAAAAGGTAATTTCATGATCTACAACTTTCATGAAGGACTCAAAAGCAATTTTAATGTTTAATTC
TAAAAAATGCTTCCGAAATTTTGTGGTTTCGATTGCCGGTCA
Done.