Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009719.1 Corchorus capsularis cultivar CVL-1 contig09740, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47688

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
349--405
19
3.0
19
65
10
53
36
8
22
31
1.85
329--500
35
4.8
35
95
3
292
37
10
20
31
1.87
6060--6096
17
2.2
17
95
0
65
16
37
10
35
1.83
6989--7026
11
3.5
11
85
10
51
57
2
0
39
1.12
7344--7427
41
2.0
42
93
2
143
47
5
3
42
1.45
10329--10367
20
2.0
20
85
10
53
48
10
2
38
1.51
19850--19885
16
2.3
15
90
4
54
38
33
16
11
1.84
21643--21706
32
2.0
32
90
6
103
21
32
7
37
1.83
24393--24511
38
3.0
38
78
10
123
58
4
30
6
1.43
24830--24864
11
3.2
11
91
0
61
0
2
17
80
0.84
26515--26565
17
3.3
17
65
34
51
37
3
11
47
1.59
26511--26598
29
3.0
29
98
0
167
38
3
11
46
1.57
27749--27776
13
2.2
13
100
0
56
14
21
0
64
1.29
33426--33451
11
2.4
11
100
0
52
53
7
0
38
1.30
34830--34890
24
2.5
24
80
15
72
32
14
21
31
1.93
35114--35154
16
2.5
17
81
14
50
31
0
2
65
1.05
36918--36966
13
3.6
13
78
10
53
75
6
6
12
1.17
38242--38310
33
2.1
33
100
0
138
47
11
14
26
1.78
40113--40201
23
3.8
23
70
7
72
22
25
33
17
1.96
40396--40468
34
2.1
34
89
0
110
26
21
32
19
1.97
40424--40518
49
1.9
50
89
4
147
28
18
32
20
1.96
40773--40834
26
2.4
26
84
7
74
19
40
27
12
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40773--40835
25
2.5
25
82
10
74
19
39
26
14
1.90
41128--41185
29
2.0
29
100
0
116
20
13
31
34
1.92
41797--41845
24
2.0
24
96
0
89
18
36
28
16
1.92
42125--42213
36
2.5
36
92
0
142
24
22
34
17
1.96
44171--44256
45
1.9
45
97
0
163
25
17
26
30
1.97
44280--44367
31
2.8
31
92
1
140
18
10
31
39
1.84
47253--47314
27
2.3
26
81
10
72
16
4
33
45
1.68

Tables:   1

The End!