Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009720.1 Corchorus capsularis cultivar CVL-1 contig09741, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68789

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--109
32
3.3
32
83
6
130
12
36
38
11
1.81
4786--4992
102
2.0
101
87
6
301
40
7
2
49
1.47
8633--8684
22
2.5
21
81
12
54
44
3
11
40
1.59
23907--23953
18
2.6
19
74
12
55
25
0
2
72
0.96
39588--39613
6
4.3
6
100
0
52
50
34
15
0
1.45
44938--44978
19
2.1
20
95
4
75
14
7
9
68
1.39
51115--51916
35
23.4
33
78
10
544
32
19
10
37
1.85
51722--51773
17
3.2
17
68
15
56
32
21
11
34
1.89
51122--51916
66
11.6
66
79
10
593
32
19
10
37
1.85
54357--54401
22
2.0
22
83
8
56
48
8
11
31
1.69
55656--55898
106
2.3
106
87
3
353
38
28
16
16
1.91
55798--56038
71
3.4
70
84
6
308
38
25
17
18
1.92
55668--55924
106
2.4
106
82
8
333
37
29
16
16
1.91
55656--56054
36
11.2
36
74
6
276
38
26
17
18
1.92
56067--56161
34
2.7
35
76
6
95
41
18
17
22
1.91
57565--57610
16
2.9
16
80
9
58
0
26
0
73
0.83
57715--57762
12
3.8
13
83
5
55
6
0
8
85
0.74
58319--58369
27
1.9
27
88
11
79
35
17
7
39
1.79
58319--58377
14
4.3
13
79
14
57
37
15
8
38
1.78
58325--58377
14
3.7
15
78
12
58
33
13
9
43
1.76
58450--58516
18
3.5
18
68
20
55
5
25
10
58
1.54
65705--65967
130
2.0
130
95
0
472
25
17
24
31
1.97

Tables:   1

The End!