Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009721.1 Corchorus capsularis cultivar CVL-1 contig09742, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64931

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
224--294
29
2.4
29
83
0
88
22
11
26
39
1.88
968--1018
24
2.2
24
96
3
95
25
25
17
31
1.97
31097--31178
38
2.0
41
86
11
116
35
10
17
36
1.85
31451--31531
40
2.0
40
97
0
153
32
17
17
33
1.93
31456--31708
34
7.5
34
77
14
215
33
15
17
32
1.92
31491--31708
65
3.3
65
91
1
328
33
15
18
32
1.92
36663--36751
43
2.1
43
100
0
178
33
19
21
25
1.97
38034--38115
38
2.0
41
86
11
116
34
13
17
35
1.88
39472--39505
16
2.1
16
94
0
59
35
29
23
11
1.90
39479--39535
9
6.8
9
73
15
50
35
33
19
12
1.89
40365--40455
7
11.9
7
77
17
83
30
38
24
6
1.81
40365--40439
23
3.3
22
82
14
89
29
38
25
6
1.81
40401--40457
9
7.0
9
74
20
54
33
35
21
10
1.87
40365--40457
16
5.9
16
84
5
111
31
37
23
7
1.83
41772--41947
86
2.0
86
95
0
316
31
21
7
38
1.82
42277--42324
22
2.2
22
88
0
69
43
8
18
29
1.79
42488--42825
22
15.5
22
68
15
132
37
10
15
36
1.81
42555--42985
22
19.9
22
67
13
146
38
9
16
34
1.82
42946--42993
22
2.2
22
85
7
62
47
8
16
27
1.75
48231--48281
24
2.2
23
89
3
75
54
0
9
35
1.33
48238--48435
110
1.8
107
88
5
299
46
3
11
39
1.55
54125--54159
17
2.1
17
100
0
70
34
5
40
20
1.76

Tables:   1

The End!