genome.fa.s9723.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009723.1 Corchorus capsularis cultivar CVL-1 contig09744, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94944

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1260--1303	20	2.1	21	87	4	63	52	20	4	22	1.65
1334--1374	17	2.4	17	95	0	73	65	12	0	21	1.25
7511--7563	27	2.0	27	92	0	88	15	33	3	47	1.63
9408--9445	7	5.3	7	87	6	58	13	13	42	31	1.82
10457--10491	17	2.1	17	100	0	70	51	5	11	31	1.61
12755--12802	22	2.3	20	86	10	62	39	25	16	18	1.91
12722--12824	53	1.9	53	88	0	152	35	28	19	16	1.93
16769--16809	14	2.8	14	88	7	55	2	0	19	78	0.87
19837--19891	3	19.0	3	85	7	78	30	3	0	65	1.10
19907--19940	15	2.3	15	94	0	59	35	0	0	64	0.94
26405--26488	42	2.0	42	100	0	168	35	4	11	47	1.61
26799--26964	22	7.5	22	69	10	79	39	10	12	37	1.78
26905--26970	21	3.0	21	82	8	71	37	6	19	36	1.77
26947--26996	26	1.9	26	91	0	82	30	10	32	28	1.89
26968--27009	22	1.9	22	90	0	66	33	11	26	28	1.92
27174--27278	22	5.0	22	70	15	78	37	11	10	40	1.76
27106--27279	67	2.7	63	81	11	167	35	10	13	40	1.79
27198--27275	40	2.0	40	89	5	122	35	11	8	43	1.72
32011--32038	6	4.7	6	100	0	56	0	14	14	71	1.15
37886--37953	34	2.0	34	94	0	118	25	16	25	33	1.95
42824--42853	3	10.0	3	92	0	51	33	0	30	36	1.58
49117--49144	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50389--50472	31	2.7	31	74	9	82	27	25	11	35	1.91
53789--53887	37	2.7	37	93	1	173	28	25	10	36	1.88
53789--53921	37	3.8	37	85	9	156	28	24	11	35	1.90
53818--53931	32	3.4	32	84	10	113	28	24	11	35	1.90
53908--54080	37	4.7	37	94	0	292	25	23	9	41	1.84
54077--54209	36	3.8	36	73	16	91	22	16	15	45	1.84
54126--54209	36	2.4	36	84	7	102	25	14	14	46	1.82
54195--54596	41	10.2	41	85	8	507	22	20	10	45	1.82
54476--54537	31	2.0	31	90	6	99	25	16	9	48	1.76
54195--54596	158	2.6	154	87	5	533	22	20	10	45	1.82
54354--54563	72	2.8	72	85	10	246	22	19	10	46	1.81
54195--54618	154	2.7	155	84	6	518	22	20	10	46	1.81
54394--54601	113	1.8	113	89	2	328	24	18	10	46	1.80
54608--55012	37	11.1	36	82	8	457	25	17	9	47	1.77
54143--54669	154	3.4	152	73	18	449	22	19	10	46	1.81
54608--55012	73	5.5	73	83	5	498	25	17	9	47	1.77
55017--55218	41	5.0	41	90	1	291	25	15	13	45	1.83
56988--57013	3	8.7	3	100	0	52	30	0	0	69	0.89
64227--64284	28	2.1	28	96	0	107	17	27	5	50	1.67
75307--75379	29	2.5	29	88	2	110	38	21	21	17	1.93
82977--83006	9	3.2	9	95	4	51	23	46	20	10	1.80
83244--83401	59	2.7	59	85	5	212	38	15	17	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83449--83582	31	4.4	31	74	11	132	27	19	17	35	1.95
83666--83782	58	2.0	58	96	0	216	34	23	5	36	1.79
84740--84764	11	2.3	11	100	0	50	92	8	0	0	0.40
86098--86139	18	2.3	19	95	4	77	40	9	21	28	1.84
86342--86448	55	1.9	55	98	0	205	35	25	1	37	1.67
86512--86538	2	13.5	2	100	0	54	51	0	0	48	1.00
86675--86838	77	2.1	77	80	7	172	34	6	10	48	1.62
87231--87268	19	1.9	19	89	5	58	52	21	0	26	1.47
87811--87863	20	2.7	19	73	21	56	56	3	1	37	1.28
87959--88032	31	2.4	31	86	4	105	8	13	36	41	1.74
87959--88032	15	4.8	16	81	6	98	8	13	36	41	1.74
88563--88617	21	2.6	21	83	11	60	56	5	5	32	1.45
89272--89362	32	2.8	32	91	0	155	18	9	34	37	1.84
89513--89625	32	3.7	31	80	15	137	7	10	29	53	1.62
89513--89587	16	4.7	16	79	0	78	5	10	29	54	1.57
90954--91117	81	2.0	82	97	1	312	35	3	12	47	1.59

Tables:   1

The End!