Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009724.1 Corchorus capsularis cultivar CVL-1 contig09745, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71354

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
854--891
18
2.1
19
90
5
60
23
10
18
47
1.79
5315--5350
18
1.9
19
88
5
56
19
11
19
50
1.77
23460--23488
15
1.9
15
100
0
58
20
6
41
31
1.79
23456--23494
15
2.5
15
79
4
51
23
12
38
25
1.90
25982--26019
18
2.1
18
100
0
76
36
21
0
42
1.53
26144--26207
32
2.0
32
90
0
101
26
25
20
28
1.99
26304--26360
6
10.3
6
71
17
52
45
0
0
54
0.99
26297--26361
22
3.0
20
85
12
78
43
0
1
55
1.09
26585--26613
13
2.2
13
100
0
58
37
0
0
62
0.96
27347--27376
13
2.2
14
94
5
53
83
6
10
0
0.81
41586--41667
30
2.8
28
88
5
110
30
14
12
42
1.82
42338--42391
26
2.1
26
96
0
99
35
9
11
44
1.72
44708--44743
17
2.1
17
100
0
72
27
5
5
61
1.41
46461--46876
216
1.9
218
88
4
631
39
16
17
25
1.91
48425--48531
29
3.6
29
83
3
115
16
30
16
35
1.92
48693--48768
30
2.5
31
76
8
93
34
15
32
17
1.91
48999--49025
2
13.5
2
100
0
54
48
0
0
51
1.00
50086--50148
29
2.1
30
85
2
83
53
1
4
39
1.31
50454--50495
21
2.0
21
95
0
75
28
16
9
45
1.79

Tables:   1

The End!