Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009725.1 Corchorus capsularis cultivar CVL-1 contig09746, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84504

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1244--1281
20
1.9
20
100
0
76
34
10
7
47
1.67
21308--21367
31
1.9
32
89
3
95
30
11
3
55
1.52
21491--21586
38
2.6
38
85
3
124
15
16
10
57
1.65
21638--21712
22
3.4
22
70
7
62
45
10
13
30
1.77
21678--21751
38
1.9
39
86
2
105
41
8
14
35
1.76
21716--21823
45
2.4
44
82
3
126
37
9
16
36
1.81
21717--21823
22
4.8
22
80
10
110
37
9
16
36
1.81
21807--21866
22
2.7
21
75
10
57
38
11
13
36
1.81
21981--22089
22
5.0
22
68
12
80
43
9
14
33
1.77
22057--22208
62
2.5
62
92
0
250
43
9
13
34
1.75
22056--22164
22
5.1
22
68
22
72
44
9
13
32
1.75
27020--27209
94
2.0
94
100
0
380
33
16
18
31
1.93
29353--29469
12
10.0
12
79
12
127
16
23
22
37
1.93
29353--29469
25
5.0
24
78
14
127
16
23
22
37
1.93
29389--29427
19
2.1
19
90
0
60
7
28
20
43
1.79
29349--29464
56
2.1
56
91
1
189
14
25
20
38
1.91
29376--29439
31
2.0
32
90
3
103
12
26
21
39
1.89
30805--30843
21
1.9
21
89
5
62
33
7
10
48
1.66
34574--34604
3
10.3
3
100
0
62
35
0
0
64
0.94
37633--37662
9
3.3
9
95
0
51
63
0
10
26
1.26
41796--41822
3
9.0
3
100
0
54
66
0
33
0
0.92
46876--47009
67
2.0
66
94
1
232
28
14
14
41
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60208--60238
7
4.3
7
95
4
53
3
12
0
83
0.75
69627--69695
33
2.1
33
94
2
122
14
14
21
49
1.79
71688--71715
14
2.0
14
100
0
56
57
0
21
21
1.41
72227--72345
42
2.8
42
94
3
204
65
9
2
22
1.34
72445--72535
48
2.0
43
85
12
121
37
24
6
31
1.81
72711--72822
56
2.0
56
100
0
224
35
16
19
28
1.93
73067--73116
25
2.0
25
92
0
82
30
10
30
30
1.90
81355--81451
41
2.4
41
83
13
114
16
13
21
48
1.80

Tables:   1

The End!