Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009726.1 Corchorus capsularis cultivar CVL-1 contig09747, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55882

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
179--209
16
1.9
16
93
0
53
29
9
3
58
1.46
3122--3178
30
1.9
30
88
0
87
33
15
21
29
1.94
3195--3245
21
2.4
21
90
0
75
27
23
17
31
1.97
3322--3346
2
12.5
2
100
0
50
52
0
0
48
1.00
9846--9902
30
1.9
30
85
0
78
33
14
21
31
1.92
9919--9969
21
2.4
21
93
0
84
25
23
19
31
1.98
13249--13285
2
19.5
2
83
10
51
51
0
0
48
1.00
19246--19282
2
18.5
2
100
0
74
51
0
0
48
1.00
22031--22103
30
2.3
32
76
11
78
31
5
38
24
1.78
22335--22553
27
8.1
27
88
0
294
43
7
28
20
1.79
36668--36725
3
19.3
3
100
0
116
67
0
0
32
0.91
43414--43450
1
37.0
1
100
0
74
0
0
0
100
0.00
49926--49951
12
2.2
12
100
0
52
30
19
34
15
1.93
51865--51900
17
2.1
18
94
5
65
11
11
30
47
1.74

Tables:   1

The End!