Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009727.1 Corchorus capsularis cultivar CVL-1 contig09748, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8426
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.33


Found at i:4135 original size:104 final size:105

Alignment explanation


    Indices: 3911--4135  Score: 335
    Period size: 105  Copynumber: 2.2  Consensus size: 105

       3901 CTGTCAGAAA

                   *        *   *      * *  **                 *            *
       3911 AGTATTAGTCGATGAATACTTCAGTTTTAATTCCAGTATTAATCGACTAAAGCTCCAAGTCTTCT
          1 AGTATTAATCGATGAAAACTCCAGTTTGAGTTTTAGTATTAATCGACTAAAACTCCAAGTCTTCA

                                                  * 
       3976 CTTTTAAAAAAGTGGCAGTGTTGACAGCGAACCCGGAGGC
         66 CTTTTAAAAAAGTGGCAGTGTTGACAGCGAACCCGGAGCC

                                                                             
       4016 AGTATTAATCGATGAAAACTCCAGTTTGAGTTTTAGTATTAATCGACTAAAACTCCAAGTCTTCA
          1 AGTATTAATCGATGAAAACTCCAGTTTGAGTTTTAGTATTAATCGACTAAAACTCCAAGTCTTCA

                 *                                  
       4081 C-TTTGAAAAAGTGGCAGTGTTGACAGCGAACCCGGAGCC
         66 CTTTTAAAAAAGTGGCAGTGTTGACAGCGAACCCGGAGCC

                     *      
       4120 AGTATTAATTGATGAA
          1 AGTATTAATCGATGAA

       4136 TACTTGAATT


Statistics
Matches: 108,  Mismatches: 12, Indels: 1
        0.89            0.10        0.01

Matches are distributed among these distances:
 104   51  0.47
 105   57  0.53

ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30


Consensus pattern (105 bp):   
AGTATTAATCGATGAAAACTCCAGTTTGAGTTTTAGTATTAATCGACTAAAACTCCAAGTCTTCA
CTTTTAAAAAAGTGGCAGTGTTGACAGCGAACCCGGAGCC
Done.