Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009728.1 Corchorus capsularis cultivar CVL-1 contig09749, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80673

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3114--3174
16
3.7
16
74
20
54
24
21
0
54
1.45
3154--3200
24
1.9
25
91
4
78
19
17
2
61
1.44
3179--3209
15
2.1
15
93
0
53
19
16
0
64
1.29
3155--3209
24
2.2
24
83
3
65
20
18
1
60
1.46
3219--3333
42
2.8
42
87
1
169
27
22
4
45
1.71
3300--3340
16
2.6
16
92
0
73
26
21
0
51
1.48
3809--3902
37
2.7
35
72
18
86
31
19
6
42
1.76
4059--4166
55
2.0
52
91
5
171
25
17
7
50
1.72
4061--4179
55
2.2
55
85
7
138
26
16
5
50
1.68
4111--4256
71
2.1
71
94
2
258
27
18
6
47
1.74
12862--12921
2
30.0
2
96
0
111
0
48
1
50
1.11
12921--12962
2
21.0
2
85
0
57
50
7
0
42
1.30
15598--15628
2
15.5
2
100
0
62
51
0
0
48
1.00
23334--23371
18
2.1
18
90
0
58
18
7
26
47
1.76
33317--33358
18
2.3
18
84
8
50
2
33
26
38
1.69
41433--41482
21
2.4
21
82
0
64
58
4
34
4
1.36
44285--44335
17
3.0
17
75
11
59
19
31
3
45
1.69
47861--47896
18
2.0
18
94
0
63
58
0
25
16
1.38
48842--48994
70
2.1
73
87
4
222
28
7
19
43
1.79
49054--49085
2
16.0
2
100
0
64
50
0
50
0
1.00
60689--60717
15
2.0
15
93
6
51
3
6
0
89
0.57
65382--65531
77
2.0
74
88
6
221
38
14
12
34
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69090--69115
4
6.5
4
100
0
52
26
0
23
50
1.50
75477--75614
70
2.0
69
81
4
161
27
16
14
41
1.87
80271--80338
33
2.1
33
88
0
100
23
11
11
52
1.70

Tables:   1

The End!