genome.fa.s9730.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009730.1 Corchorus capsularis cultivar CVL-1 contig09751, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59021

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3705--3780	30	2.6	29	85	4	89	38	36	10	14	1.81
6142--6183	20	2.1	20	86	0	57	14	23	19	42	1.87
7459--7491	2	16.5	2	100	0	66	48	0	0	51	1.00
7703--7747	21	2.2	20	84	11	56	40	20	4	35	1.72
11553--11594	20	2.1	20	86	0	57	14	23	19	42	1.87
12383--12415	6	5.5	6	96	0	57	57	12	0	30	1.35
13344--13369	10	2.6	10	100	0	52	23	7	19	50	1.73
16213--16248	18	1.9	19	88	5	56	13	0	22	63	1.29
17031--17221	7	28.9	7	66	20	99	15	24	3	57	1.52
17049--17130	27	3.3	27	68	25	81	14	23	3	58	1.52
17063--17167	19	5.1	19	70	20	77	14	22	3	59	1.52
17020--17144	46	2.7	46	92	2	205	14	23	4	58	1.53
17109--17167	19	3.1	19	80	9	84	15	22	3	59	1.51
17181--17221	19	2.2	19	86	0	55	14	21	4	58	1.55
17151--17303	46	3.2	45	81	13	155	18	22	4	54	1.62
17279--17338	26	2.3	26	85	0	84	16	21	3	58	1.53
17296--17365	19	3.5	18	69	19	50	14	18	2	64	1.41
17300--17729	22	20.1	22	75	15	307	21	17	3	56	1.56
17348--17729	44	8.9	44	77	11	348	22	17	4	55	1.59
17378--17456	8	10.6	8	67	15	53	24	18	0	56	1.41
17350--17729	171	2.2	171	95	0	681	22	17	4	55	1.59
17399--17727	149	2.2	149	82	9	370	23	16	4	55	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17710--17764	28	2.0	28	82	6	69	16	23	7	52	1.68
23426--23475	21	2.3	22	83	13	68	12	22	20	46	1.83
24474--24519	23	2.0	23	83	12	58	45	23	10	19	1.82
26492--26594	52	2.0	52	94	0	179	30	14	17	37	1.90
33354--33420	33	2.0	33	100	0	134	40	2	17	38	1.65
33766--33823	29	2.0	29	82	0	71	20	15	17	46	1.84
36574--36604	2	15.5	2	93	0	53	45	0	0	54	0.99
36574--36613	8	5.0	8	93	0	53	42	2	0	55	1.13
39706--39813	22	4.9	22	70	8	85	32	11	9	47	1.71
39927--39976	23	2.2	23	92	0	82	44	14	4	38	1.63
40003--40142	22	6.5	22	73	10	101	34	16	8	40	1.79
40003--40099	44	2.2	44	81	7	117	32	16	8	42	1.78
40333--40433	21	4.6	22	74	15	84	32	14	8	43	1.77
40223--40450	22	10.5	22	68	19	88	34	15	8	41	1.78
40456--40573	22	5.4	22	73	11	89	36	16	7	38	1.78
40470--40573	44	2.4	45	78	13	110	36	17	8	37	1.80
40607--40792	22	8.4	22	73	8	144	40	18	8	32	1.80
40616--40769	46	3.5	43	81	11	127	40	18	8	32	1.80
40880--40910	6	5.2	6	92	0	53	16	0	29	54	1.42
42354--42421	30	2.2	32	89	5	104	51	5	14	27	1.65
42287--42588	161	1.9	161	92	2	509	50	3	12	32	1.59
42514--42577	30	2.1	30	85	5	85	51	4	15	28	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42820--42863	21	2.1	21	83	8	54	18	31	9	40	1.81
42928--43036	32	3.4	32	94	1	182	15	42	30	11	1.83
43079--43255	33	5.4	33	88	4	225	12	33	41	11	1.79
43334--43406	32	2.2	33	85	7	96	12	43	34	9	1.75
44490--44524	1	35.0	1	100	0	70	100	0	0	0	0.00
44804--44831	2	14.0	2	100	0	56	50	0	0	50	1.00
55792--55823	5	6.6	5	96	3	57	81	0	0	18	0.70
56725--56778	25	2.1	26	93	3	92	20	12	18	48	1.81
58693--59002	111	2.8	112	92	2	498	34	16	24	24	1.96

Tables:   1

The End!