Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009731.1 Corchorus capsularis cultivar CVL-1 contig09752, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111450

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35--91
29
2.0
29
92
0
96
47
12
10
29
1.74
64--394
170
1.9
173
86
4
472
34
13
21
30
1.92
314--475
81
2.0
81
87
0
234
21
14
31
32
1.94
148--641
248
2.0
251
91
1
805
29
14
24
31
1.94
395--812
167
2.5
167
89
2
640
30
15
23
29
1.96
64--902
418
2.0
422
89
2
1276
31
15
23
30
1.95
732--893
81
2.0
81
90
0
252
24
16
29
29
1.97
883--962
42
1.9
42
94
0
142
17
31
10
41
1.82
5065--5116
26
2.0
26
85
11
70
53
1
7
36
1.41
5795--5859
2
33.0
2
78
9
62
41
0
3
55
1.15
12843--12869
4
6.8
4
100
0
54
77
0
22
0
0.76
18901--18977
29
2.6
30
85
10
113
31
28
10
29
1.90
19606--19640
13
2.8
13
86
4
54
20
42
8
28
1.81
23406--23451
21
2.1
22
84
8
58
36
10
17
34
1.85
36935--36973
16
2.8
13
79
20
51
23
7
33
35
1.83
38808--38905
50
2.0
47
92
5
160
43
13
13
29
1.81
51317--51477
60
2.7
60
93
1
270
36
17
19
26
1.94
51348--51446
29
3.4
28
68
15
83
35
17
20
27
1.94
51313--51479
31
5.5
30
68
16
105
34
18
19
26
1.95
51507--51611
31
3.5
29
73
15
97
25
19
20
35
1.95
51509--51670
60
2.7
60
84
2
209
27
17
17
36
1.93
68625--68698
29
2.5
30
88
4
105
48
8
27
16
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83901--83999
29
3.4
28
71
10
83
35
11
20
33
1.88
84072--84203
61
2.2
60
82
6
151
34
19
12
33
1.89
86123--86147
2
12.5
2
100
0
50
52
0
0
48
1.00

Tables:   1

The End!