Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009732.1 Corchorus capsularis cultivar CVL-1 contig09753, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76031

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2415--2451
17
2.1
18
95
5
67
27
35
10
27
1.90
12224--12260
2
19.0
2
94
5
67
51
0
0
48
1.00
12602--13115
22
23.7
21
71
12
238
35
15
9
39
1.80
12865--12949
23
3.7
23
84
1
100
37
14
7
41
1.73
12844--12949
45
2.3
45
81
9
126
36
14
9
39
1.78
13222--13300
22
3.6
22
79
1
79
36
13
8
40
1.76
13240--13490
22
11.3
22
69
15
97
35
17
9
37
1.83
14416--14483
30
2.2
32
81
7
86
50
4
10
35
1.57
14424--14493
30
2.3
31
85
5
97
51
2
12
32
1.55
14894--15351
228
2.0
228
94
0
810
33
15
12
37
1.86
17584--17625
6
7.3
6
78
10
52
2
2
14
80
0.90
17584--17630
22
2.1
22
88
4
67
2
4
17
76
1.04
31234--31275
20
2.0
21
86
4
59
47
9
0
42
1.36
31570--31679
43
2.6
42
75
13
102
40
30
10
19
1.84
31776--31817
2
21.0
2
100
0
84
50
50
0
0
1.00
31817--31843
2
13.5
2
100
0
54
51
0
0
48
1.00
41242--41272
11
2.7
12
90
10
55
6
9
25
58
1.54
41349--41384
9
3.9
9
92
3
54
0
13
41
44
1.44
42428--42488
20
3.0
21
78
4
79
42
8
13
36
1.74
42935--42977
17
2.6
16
82
7
50
74
0
20
4
1.00
42940--42977
17
2.3
17
86
4
51
73
0
21
5
1.02
49573--49612
17
2.3
17
86
4
53
5
22
0
72
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49578--49606
14
2.1
14
100
0
58
6
20
0
72
1.07
52301--52333
17
1.9
17
93
0
57
36
24
21
18
1.95
58871--58938
12
5.5
12
93
6
118
35
16
23
25
1.95
58871--58938
25
2.7
25
100
0
136
35
16
23
25
1.95
61213--61245
6
5.7
6
96
3
59
33
0
12
54
1.37
61855--61896
3
14.3
3
95
5
77
33
35
0
30
1.58
62839--62874
10
3.6
10
96
0
63
30
5
22
41
1.76
62985--63023
12
3.6
12
74
25
50
30
15
28
25
1.96
63362--63387
2
13.0
2
100
0
52
50
0
0
50
1.00
70173--70227
26
2.0
26
89
6
83
61
7
9
21
1.50

Tables:   1

The End!