Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009733.1 Corchorus capsularis cultivar CVL-1 contig09754, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127812

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4689--4731
21
2.0
21
100
0
86
41
23
16
18
1.89
8862--8896
3
11.7
3
87
0
52
0
2
62
34
1.10
13548--13612
30
2.1
31
91
8
107
30
16
3
49
1.61
13566--13624
30
2.0
29
87
9
84
33
15
3
47
1.62
14176--14357
22
8.1
22
71
6
105
35
8
17
39
1.80
14393--14789
22
17.9
22
71
12
168
39
9
16
34
1.81
14868--14919
20
2.6
20
90
0
77
44
11
17
26
1.83
14888--15009
44
2.8
44
79
11
128
39
10
15
34
1.82
14931--15157
22
10.6
22
71
14
143
41
9
14
33
1.78
15055--15136
23
3.8
22
78
12
80
41
7
12
39
1.70
15120--15201
22
3.7
22
79
9
78
35
13
14
36
1.86
15229--15312
22
3.8
22
77
3
69
34
11
14
39
1.83
19300--19353
5
10.8
5
97
0
90
20
0
64
14
1.28
19657--19713
24
2.5
22
84
13
80
47
15
0
36
1.46
19669--19718
24
2.1
24
100
0
100
52
12
0
36
1.39
25888--25927
12
3.3
12
89
0
62
42
7
0
50
1.30
25879--25927
2
25.0
2
79
4
55
42
8
0
48
1.32
39392--39453
31
2.0
31
100
0
124
22
9
9
58
1.59
59777--59803
13
2.1
13
100
0
54
48
7
7
37
1.59
61932--61989
29
2.0
30
82
3
73
27
25
13
32
1.94
63315--63345
2
16.0
2
93
6
55
51
0
0
48
1.00
69211--69235
3
8.3
3
100
0
50
68
0
32
0
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74177--74205
2
14.5
2
100
0
58
51
0
0
48
1.00
79195--79259
30
2.1
31
91
2
105
29
18
3
49
1.63
79195--79267
31
2.4
31
88
4
94
30
16
4
49
1.64
80053--80090
20
1.9
20
94
0
67
26
2
0
71
1.00
80860--81051
22
8.8
21
75
5
141
39
9
16
35
1.81
80856--81074
66
3.3
66
74
1
170
38
9
15
36
1.80
81176--81715
22
24.7
22
70
11
211
39
9
14
36
1.79
81323--81446
45
2.8
45
79
8
112
38
9
12
39
1.75
94047--94136
45
2.0
45
89
4
137
23
17
31
27
1.97
102840--102871
15
2.1
15
94
0
55
9
15
12
62
1.54
103503--103550
25
1.9
25
95
0
87
29
6
16
47
1.71
104055--104079
2
12.5
2
100
0
50
48
0
0
52
1.00
104078--104484
135
3.0
135
97
0
751
27
15
19
36
1.93
106021--106600
35
16.7
34
90
4
769
32
17
10
38
1.85
112842--112909
12
5.5
12
89
6
109
33
16
25
25
1.95
112842--112909
25
2.7
25
97
0
127
33
16
25
25
1.95
114586--114621
10
3.6
10
96
0
63
33
8
19
38
1.82
115126--115161
2
18.0
2
100
0
72
50
0
0
50
1.00
116169--116252
39
2.1
39
91
2
132
36
2
26
34
1.70
116867--116952
45
1.9
45
90
0
136
12
10
22
54
1.68
118776--118848
27
2.7
27
100
0
146
28
27
8
35
1.86
122098--122281
72
2.6
72
78
1
163
39
9
34
17
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
122546--122598
26
2.0
26
100
0
106
37
32
18
11
1.87
122661--122867
102
2.0
102
99
0
405
20
22
22
34
1.97

Tables:   1

The End!