genome.fa.s9734.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009734.1 Corchorus capsularis cultivar CVL-1 contig09755, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16463

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350--376	13	2.1	13	100	0	54	62	0	0	37	0.95
886--916	16	1.9	16	100	0	62	29	32	19	19	1.96
2110--2147	19	2.0	19	85	10	51	39	5	13	42	1.66
5016--5072	24	2.4	24	93	0	96	38	29	10	21	1.87
6960--7047	43	2.0	45	86	8	128	55	4	15	23	1.59
10503--10598	22	4.6	21	69	21	67	38	13	7	40	1.72
10502--10673	62	2.8	62	94	0	290	35	12	8	43	1.74
10770--10823	22	2.4	22	81	3	63	38	18	12	29	1.88
10853--10908	22	2.5	22	82	2	67	41	10	10	37	1.75
10873--10998	22	5.6	23	75	7	82	40	12	7	38	1.73
11028--11100	22	3.3	22	67	24	55	31	15	9	43	1.78
11003--11101	44	2.2	44	82	3	119	32	15	10	42	1.80
11158--11211	19	2.8	19	88	0	81	22	25	11	40	1.87
11286--11454	44	3.9	42	76	12	155	35	11	10	42	1.75
11286--11450	86	1.9	86	83	4	217	34	12	10	43	1.76
11439--11536	21	4.5	22	74	14	69	37	10	8	43	1.68
11311--11671	22	16.3	22	69	17	139	36	14	9	39	1.78
11737--11784	22	2.2	22	88	0	69	45	22	4	27	1.70
11791--11900	22	5.0	22	78	6	89	36	17	10	36	1.83
12174--12238	30	2.1	31	91	2	105	46	4	20	29	1.70
14040--16185	199	10.8	198	83	4	2548	34	17	13	34	1.89
14040--16185	394	5.4	396	85	3	2638	34	17	13	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16272--16390	59	2.0	58	93	1	202	30	5	21	43	1.73

Tables:   1

The End!