Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009737.1 Corchorus capsularis cultivar CVL-1 contig09758, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4406
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.35


Found at i:3229 original size:22 final size:23

Alignment explanation


    Indices: 3204--3248  Score: 74
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       3194 TGCATAATCA

                                   
       3204 GGACTCC-TTGTGAGAGCATTTG
          1 GGACTCCTTTGTGAGAGCATTTG

                          *        
       3226 GGACTCCTTTGTGATAGCATTTG
          1 GGACTCCTTTGTGAGAGCATTTG

       3249 TCTTGCTTCA


Statistics
Matches: 21,  Mismatches: 1, Indels: 1
        0.91            0.04        0.04

Matches are distributed among these distances:
  22    7  0.33
  23   14  0.67

ACGTcount: A:0.18, C:0.18, G:0.29, T:0.36


Consensus pattern (23 bp):   
GGACTCCTTTGTGAGAGCATTTG

Found at i:4352 original size:2 final size:2

Alignment explanation


    Indices: 4347--4381  Score: 61
    Period size: 2  Copynumber: 17.5  Consensus size: 2

       4337 TGTGTGTGTG

                                        *                       
       4347 TA TA TA TA TA TA TA TA TA TG TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       4382 GGTACTAAAA


Statistics
Matches: 31,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51


Consensus pattern (2 bp):   
TA

Done.