Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009739.1 Corchorus capsularis cultivar CVL-1 contig09760, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122416

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--26
2
13.0
2
100
0
52
50
0
0
50
1.00
7080--7160
43
1.9
42
97
2
153
13
18
16
51
1.76
11476--11504
2
14.5
2
100
0
58
48
0
0
51
1.00
23363--23470
54
2.0
54
98
0
207
28
27
23
20
1.99
26169--26631
124
3.7
125
85
2
608
31
14
14
38
1.87
27823--27852
13
2.3
13
100
0
60
33
13
0
53
1.40
28229--29046
215
3.8
214
88
2
1121
39
15
17
27
1.89
29505--29531
3
9.0
3
100
0
54
66
0
0
33
0.92
29764--29806
12
3.5
12
90
6
68
32
16
25
25
1.96
32551--32599
23
2.1
23
96
0
89
14
30
22
32
1.93
33910--33937
2
14.0
2
100
0
56
50
0
0
50
1.00
35945--35973
2
14.5
2
100
0
58
51
0
0
48
1.00
65679--65710
2
16.5
2
93
6
57
46
0
0
53
1.00
65847--65881
2
18.0
2
94
5
63
48
0
51
0
1.00
78647--78702
29
1.9
29
85
7
78
23
12
16
48
1.80
89344--89405
31
2.0
31
93
0
106
40
4
17
37
1.71
92542--92603
31
2.0
31
96
0
115
40
6
17
35
1.76
93307--93368
32
2.0
31
90
3
97
41
19
9
29
1.83
93557--93582
2
13.0
2
100
0
52
50
0
0
50
1.00
95060--95105
11
4.5
10
81
18
51
47
0
2
50
1.13
95069--95106
2
20.0
2
89
10
62
50
0
0
50
1.00
98489--98745
122
2.1
121
87
5
367
35
19
14
31
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
103191--103232
18
2.3
18
84
8
50
9
26
9
54
1.63

Tables:   1

The End!