Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01000974.1 Corchorus capsularis cultivar CVL-1 contig00974, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5319

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14--109
38
2.6
37
81
3
129
15
18
9
56
1.66
246--283
19
2.0
20
85
15
53
28
5
2
63
1.30
450--577
44
2.9
44
83
6
145
34
11
16
37
1.85
447--578
66
2.0
66
79
8
144
33
11
17
37
1.85
447--578
22
6.0
22
75
9
119
33
11
17
37
1.85
668--1656
22
44.6
22
66
17
225
38
9
16
35
1.81
894--1059
65
2.5
63
78
12
174
42
9
13
34
1.75
1164--1215
20
2.6
20
93
0
86
42
13
17
26
1.86
1289--1406
60
2.0
61
84
1
157
42
6
15
35
1.73
1372--1473
23
4.5
23
81
3
100
37
7
15
39
1.77
3888--3934
21
2.2
21
88
0
67
44
6
21
27
1.76
3902--3950
23
2.2
21
85
7
62
40
10
18
30
1.84

Tables:   1

The End!