Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009740.1 Corchorus capsularis cultivar CVL-1 contig09761, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9043

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--40
2
18.5
2
100
0
74
48
0
0
51
1.00
1123--1311
89
2.1
88
96
2
342
29
24
10
35
1.88
2774--2798
3
8.3
3
100
0
50
64
0
0
36
0.94
2873--2905
2
16.5
2
100
0
66
51
0
0
48
1.00
4082--4188
23
4.7
23
86
2
128
41
8
14
36
1.76
4016--4207
45
4.5
44
74
12
157
42
8
15
33
1.76
4081--4207
22
5.7
22
82
5
130
40
8
14
37
1.76
4249--4291
22
2.0
22
85
0
59
34
11
16
37
1.85
4349--4411
22
2.9
22
88
4
92
34
9
15
39
1.80
4601--4708
22
4.9
22
66
15
71
46
7
12
34
1.69
5302--5427
45
2.8
45
77
10
116
37
13
8
40
1.76
5114--5633
22
23.8
22
70
8
220
35
16
10
37
1.82
5740--6004
22
12.0
22
76
11
139
36
16
11
34
1.86
5774--6004
88
2.6
88
88
5
315
35
16
12
35
1.86
5784--6005
22
10.1
22
80
7
254
35
16
12
36
1.86
6170--6206
19
1.9
19
89
10
58
62
0
5
32
1.18
6337--6413
38
2.1
35
88
7
109
59
12
14
12
1.61
6607--6651
2
21.5
2
82
8
54
46
4
4
44
1.43
6607--6651
23
2.0
23
86
8
65
46
4
4
44
1.43
6792--6823
11
2.9
11
95
0
55
46
9
3
40
1.52
7138--7180
11
3.9
11
90
0
68
46
6
4
41
1.51
7134--7180
22
2.1
22
96
0
85
46
6
4
42
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6635--7345
357
2.0
350
93
3
1230
36
18
8
35
1.82

Tables:   1

The End!