Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009741.1 Corchorus capsularis cultivar CVL-1 contig09762, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22340

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6--48
4
10.5
4
85
5
59
74
0
25
0
0.82
120--164
19
2.4
19
88
0
72
0
15
4
80
0.87
125--164
16
2.5
16
84
8
55
0
15
2
82
0.77
136--165
13
2.2
14
94
5
53
0
13
3
83
0.77
1941--1968
13
2.2
13
100
0
56
25
17
7
50
1.72
2050--2079
15
1.9
16
93
6
53
43
0
16
40
1.48
7037--7817
390
2.0
390
99
0
1553
30
14
24
30
1.95
10287--10312
6
4.3
6
100
0
52
0
15
0
84
0.62
16820--16844
8
3.1
8
100
0
50
12
0
36
52
1.39
17232--17412
60
3.0
60
98
0
344
22
8
22
46
1.78
18889--18988
43
2.3
43
100
0
200
41
12
12
35
1.79
19025--19055
2
15.5
2
100
0
62
51
0
0
48
1.00
19131--19563
164
2.6
165
81
4
516
30
14
15
39
1.87
19729--19762
17
2.0
17
94
0
59
44
0
8
47
1.34
19991--20296
166
1.8
165
86
3
445
31
13
15
39
1.86
20849--20907
21
2.8
21
76
19
59
25
16
8
49
1.74
20938--21235
34
8.8
33
73
17
195
16
24
3
55
1.57
21051--21161
7
16.6
7
72
12
90
15
24
1
58
1.47
21051--21123
19
3.8
19
80
3
92
15
26
1
57
1.46
21007--21151
46
3.1
46
88
4
202
15
26
3
55
1.56
20953--21235
39
7.3
39
71
13
151
15
25
3
55
1.56
21070--21159
27
3.6
26
69
25
86
14
22
2
61
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21051--21161
13
8.3
14
73
11
90
15
24
1
58
1.47
21051--21161
12
8.3
14
67
17
58
15
24
1
58
1.47
21109--21235
35
3.5
35
83
9
166
14
22
3
58
1.53
21092--21263
74
2.3
75
79
11
201
16
23
4
55
1.60

Tables:   1

The End!