Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009745.1 Corchorus capsularis cultivar CVL-1 contig09766, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39844

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4570--4637
26
2.6
26
95
0
118
54
10
0
35
1.35
4570--4614
15
3.3
15
76
23
62
53
11
0
35
1.37
4768--4796
11
2.6
11
100
0
58
20
0
0
79
0.74
8737--8826
46
2.0
44
86
4
126
31
21
14
33
1.93
14160--14345
42
4.4
42
82
0
174
23
23
26
26
2.00
14142--14320
84
2.1
84
78
4
189
23
22
29
24
1.99
19924--19997
30
2.5
30
97
0
139
43
10
32
13
1.79
20274--20331
24
2.5
24
83
8
66
32
3
0
63
1.11
20769--21053
22
13.1
21
77
8
243
31
16
11
40
1.84
20803--21045
65
3.7
66
79
10
216
31
16
11
40
1.84
20847--21085
44
5.5
43
82
4
234
28
17
11
42
1.84
21470--21728
22
11.8
22
80
4
218
28
18
14
37
1.91
23320--23354
13
2.7
13
95
0
61
20
11
8
60
1.57
23641--23713
22
3.3
22
84
0
83
36
17
10
34
1.85
24561--24635
22
3.4
22
78
10
73
36
16
10
37
1.83
32254--32289
2
18.0
2
100
0
72
0
50
0
50
1.00

Tables:   1

The End!