Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009747.1 Corchorus capsularis cultivar CVL-1 contig09768, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45753

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
834--875
20
2.0
21
86
4
59
23
19
21
35
1.96
8150--8216
7
10.0
7
93
6
113
14
0
44
40
1.46
8150--8216
13
5.0
14
89
10
113
14
0
44
40
1.46
8150--8216
20
3.3
20
93
6
118
14
0
44
40
1.46
8651--8707
27
2.1
27
100
0
114
12
14
17
56
1.68
19037--19065
14
2.1
14
100
0
58
20
34
17
27
1.95
19325--19359
2
17.5
2
93
0
61
48
2
0
48
1.16
20580--21053
156
3.0
155
86
5
618
31
13
19
35
1.91
23008--23066
22
2.7
22
86
0
73
32
13
22
32
1.92
23555--23673
60
1.9
63
88
8
183
36
10
13
39
1.78
23531--23670
22
6.6
22
79
9
116
37
10
16
35
1.82
23687--23765
22
3.6
22
87
0
104
39
10
17
32
1.83
23687--23793
44
2.5
44
83
4
128
42
9
18
29
1.82
23819--23909
22
4.1
22
81
0
110
37
8
14
39
1.77
23996--24084
22
4.0
22
76
11
101
31
6
19
42
1.77
24001--24084
44
1.9
44
90
0
132
30
7
20
41
1.79
27335--27383
23
2.1
23
92
0
80
34
6
10
48
1.62
30475--31330
99
8.8
96
82
5
664
22
31
15
30
1.95
30469--31330
49
17.7
48
84
3
706
22
31
15
30
1.95
32851--33057
14
16.4
13
69
16
75
63
15
11
9
1.52
32866--32907
22
1.9
22
100
0
84
66
16
9
7
1.42
32992--33033
22
1.9
22
100
0
84
66
16
9
7
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32822--33059
126
1.9
127
94
0
424
60
17
10
11
1.58
35460--35521
11
5.6
11
82
0
70
59
8
6
25
1.50
35458--35516
22
2.7
22
89
0
100
61
8
5
25
1.46
35509--35553
23
2.0
23
86
0
63
57
4
4
33
1.38
35531--35570
17
2.4
16
83
4
53
60
7
5
27
1.45
44072--44141
29
2.4
29
78
7
79
47
14
4
34
1.64
44568--44618
25
2.0
25
100
0
102
37
19
23
19
1.94
44918--45073
80
2.0
79
88
3
233
23
28
14
33
1.94

Tables:   1

The End!