Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009758.1 Corchorus capsularis cultivar CVL-1 contig09779, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39669

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1241--1404
35
4.7
35
89
4
233
38
9
18
32
1.84
1233--1404
71
2.4
70
89
4
283
38
9
18
33
1.83
5443--5476
16
2.1
16
88
0
50
23
2
17
55
1.55
5627--5651
2
12.5
2
100
0
50
48
0
0
52
1.00
6383--6458
39
1.9
39
94
0
134
18
23
9
48
1.76
13532--13630
49
2.0
49
90
0
153
42
10
12
35
1.76
16654--17110
230
2.0
230
96
0
851
24
19
16
40
1.91
24855--24892
15
2.4
16
91
4
60
0
47
0
52
1.00
25148--25188
21
2.0
21
100
0
82
36
9
14
39
1.79
26121--26153
6
5.7
6
89
3
50
12
36
30
21
1.90
25884--26709
421
2.0
421
97
0
1564
32
14
20
32
1.93
26636--26847
106
2.0
106
100
0
424
33
20
12
33
1.90
33674--33728
24
2.3
25
87
6
78
34
23
0
41
1.55
35367--35499
64
2.1
64
94
0
230
41
15
17
26
1.88
39421--39461
20
2.0
21
86
13
59
29
0
2
68
1.03

Tables:   1

The End!