Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009759.1 Corchorus capsularis cultivar CVL-1 contig09780, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33790

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
140--181
16
2.6
16
80
0
57
35
0
0
64
0.94
144--201
24
2.4
24
80
5
64
37
0
1
60
1.07
3923--3999
39
2.0
39
92
0
127
36
16
7
38
1.78
4743--4776
1
34.0
1
100
0
68
100
0
0
0
0.00
14545--14650
31
3.5
31
79
7
119
38
17
17
25
1.92
14694--14747
11
4.9
11
72
0
54
24
29
31
14
1.95
14694--14748
22
2.5
22
78
0
65
23
29
30
16
1.96
14761--14830
12
5.9
11
73
14
50
77
1
2
18
0.97
14755--14818
18
3.5
17
77
12
65
78
0
1
20
0.84
14778--14836
5
11.6
5
77
13
50
79
1
1
16
0.89
20760--20864
31
3.5
31
76
7
108
26
17
18
38
1.92
28864--28901
20
2.0
20
89
5
60
52
5
15
26
1.64
30958--30982
12
2.1
12
100
0
50
32
36
8
24
1.84
31072--31201
66
2.0
66
100
0
260
55
3
11
30
1.51
31266--31298
2
16.5
2
100
0
66
51
0
0
48
1.00
32236--32296
31
2.0
31
83
6
79
49
3
18
29
1.63
32359--32520
60
2.7
60
92
2
256
34
18
19
27
1.95
32358--32522
31
5.5
30
70
17
128
34
18
19
27
1.95
32552--32680
31
4.2
31
73
11
122
25
19
16
38
1.92
32581--32741
60
2.7
61
86
4
220
26
19
18
36
1.95
32818--32870
4
13.2
4
91
0
52
37
0
11
50
1.38
32818--32870
6
8.8
6
80
0
52
37
0
11
50
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32816--32871
10
5.8
10
85
8
62
35
0
14
50
1.43
33617--33642
2
13.0
2
100
0
52
50
0
0
50
1.00
33763--33790
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!