Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000976.1 Corchorus capsularis cultivar CVL-1 contig00976, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 717

Length: 1196
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.27


Found at i:660 original size:16 final size:17

Alignment explanation


    Indices: 635--667  Score: 50
    Period size: 16  Copynumber: 2.0  Consensus size: 17

        625 TACGCTTGAG

                 *           
        635 GTTTCCAAAAAA-AAAA
          1 GTTTCAAAAAAAGAAAA

                             
        651 GTTTCAAAAAAAGAAAA
          1 GTTTCAAAAAAAGAAAA

        668 AGAAAAAAAG


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  16   11  0.73
  17    4  0.27

ACGTcount: A:0.64, C:0.09, G:0.09, T:0.18


Consensus pattern (17 bp):   
GTTTCAAAAAAAGAAAA
Done.