Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009766.1 Corchorus capsularis cultivar CVL-1 contig09787, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52135

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
205--234
3
10.0
3
92
0
51
63
0
3
33
1.11
23549--23583
2
17.5
2
100
0
70
51
0
0
48
1.00
25530--25574
19
2.4
18
81
3
54
53
26
13
6
1.64
26682--26842
59
2.7
59
89
0
241
35
18
18
27
1.95
26872--27100
31
7.6
29
70
14
162
28
19
18
33
1.95
26874--27097
60
3.7
60
91
3
362
28
19
18
33
1.95
29213--29317
30
3.5
30
81
2
131
21
25
25
26
2.00
32878--32915
11
3.5
11
89
10
51
39
0
2
57
1.12
35921--36021
16
6.3
16
72
4
62
33
34
20
10
1.88
36562--36643
42
2.0
42
90
0
128
41
18
3
36
1.68
36871--36917
16
2.9
16
78
6
51
31
29
23
14
1.95
37121--37159
12
3.2
12
78
7
51
23
17
15
43
1.87
37105--37159
25
2.2
25
93
0
92
20
16
16
47
1.83
37110--37154
13
3.5
13
78
6
56
17
20
17
44
1.87
38821--38880
31
2.0
29
84
9
77
41
21
8
28
1.82
41081--41168
29
3.0
29
79
3
86
45
12
11
30
1.77
42738--42815
29
2.7
29
81
2
93
29
15
14
41
1.86

Tables:   1

The End!