Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009768.1 Corchorus capsularis cultivar CVL-1 contig09789, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38290

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1833--2326
209
2.4
209
95
0
882
28
18
19
33
1.95
3291--3322
15
2.1
15
100
0
64
43
6
6
43
1.54
4593--4650
24
2.4
25
82
11
75
60
17
5
17
1.54
4607--4657
24
2.1
25
92
3
86
62
15
5
15
1.50
11808--11873
32
2.1
32
91
0
105
28
18
6
46
1.72
21127--21253
22
6.0
22
72
12
72
52
4
10
32
1.56
21392--21439
21
2.3
20
79
10
60
58
8
14
18
1.61
21542--21579
20
2.0
20
84
5
51
52
2
10
34
1.50
23743--23900
78
2.0
78
100
0
316
29
16
25
28
1.97
37890--37991
31
3.3
31
85
0
141
35
27
20
16
1.94

Tables:   1

The End!