Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009775.1 Corchorus capsularis cultivar CVL-1 contig09796, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32218

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
563--588
5
5.2
5
100
0
52
80
0
19
0
0.71
1252--1277
1
26.0
1
100
0
52
0
0
0
100
0.00
8650--8681
2
16.0
2
100
0
64
50
0
0
50
1.00
9022--9167
22
6.7
22
69
10
59
34
15
7
41
1.76
10570--10614
21
2.1
22
83
4
56
15
40
8
35
1.79
10579--10620
21
2.0
21
86
9
59
14
42
7
35
1.73
10939--11054
33
3.5
33
82
5
137
11
37
35
15
1.83
17940--18044
52
2.0
52
96
0
192
47
19
1
31
1.60
19648--19673
2
13.0
2
100
0
52
50
0
0
50
1.00
22754--22784
2
16.0
2
93
6
55
48
0
0
51
1.00
22803--22845
21
2.0
21
81
4
50
9
13
9
67
1.42
22993--23586
22
27.7
21
68
13
173
35
15
10
38
1.81
23302--23386
23
3.7
23
84
1
100
38
15
5
40
1.71
23295--23386
46
2.0
45
85
2
121
38
17
6
38
1.76
23536--23586
19
2.6
20
90
6
86
25
17
11
45
1.83
23668--23882
22
9.7
22
69
13
97
34
13
10
40
1.80
23665--23817
66
2.3
66
79
2
173
34
15
10
39
1.82
23922--23976
22
2.5
23
82
11
71
38
16
5
40
1.72
23937--23987
22
2.3
22
82
0
66
41
19
7
31
1.80
24087--24134
22
2.2
22
84
0
60
41
22
8
27
1.82
24087--24228
68
2.1
66
81
5
160
38
18
9
33
1.84
24142--24225
22
3.9
21
75
7
78
36
15
10
36
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24392--24429
19
2.0
20
85
15
53
63
2
5
28
1.30
24567--24643
38
2.1
36
85
7
102
57
11
16
14
1.66
24954--24987
2
17.0
2
93
0
59
47
0
2
50
1.16
26340--26381
13
3.5
13
75
24
56
26
4
9
59
1.48
26335--26381
22
2.1
22
96
0
85
23
4
12
59
1.51
31049--31477
122
3.6
119
76
16
443
51
3
9
34
1.53
30993--31350
120
3.0
116
72
19
367
51
5
8
34
1.56
30993--31468
242
2.0
239
93
1
817
51
4
9
34
1.55
31158--31518
121
3.0
117
73
16
319
51
4
11
32
1.57

Tables:   1

The End!