genome.fa.s9778.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009778.1 Corchorus capsularis cultivar CVL-1 contig09799, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37533

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
448--509	17	3.4	17	80	20	79	38	9	6	45	1.63
544--602	31	1.9	31	89	6	93	33	13	3	49	1.59
703--779	38	2.1	35	88	7	109	14	15	11	58	1.63
907--949	19	2.1	21	84	16	56	27	6	2	62	1.33
1117--1262	22	6.4	22	71	13	89	32	7	20	39	1.81
1120--1206	44	2.0	43	82	6	104	35	9	18	36	1.83
1209--1260	26	2.0	26	88	0	77	30	3	25	40	1.73
1373--1657	22	12.8	21	70	18	125	40	9	14	34	1.79
1450--1682	44	5.3	43	73	10	161	42	9	13	33	1.78
1484--1682	88	2.2	88	80	7	215	42	9	13	34	1.77
1763--1965	22	9.5	21	71	16	78	42	10	15	31	1.81
1801--2312	44	11.8	44	72	12	248	38	10	15	35	1.83
1953--2019	16	3.8	16	70	21	53	37	7	17	37	1.79
1932--2041	38	2.9	38	91	0	166	41	8	16	33	1.78
1801--2397	22	27.6	21	68	14	161	39	10	15	35	1.82
2183--2268	45	1.9	45	83	4	111	33	11	16	38	1.85
2521--2555	2	18.0	2	88	5	54	48	2	0	48	1.16
5239--5292	23	2.3	23	81	6	56	42	7	16	33	1.76
5665--5723	30	1.9	30	86	3	82	23	8	28	38	1.84
8132--8170	21	1.9	21	94	5	71	20	10	5	64	1.44
9555--9608	27	2.0	27	100	0	108	29	14	3	51	1.60
9563--9611	14	3.6	14	72	5	55	28	14	4	53	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9562--9619	27	2.1	27	87	6	82	32	12	3	51	1.56
9852--9884	17	1.9	17	93	0	57	60	15	0	24	1.35
13073--13181	54	2.0	55	85	8	152	38	13	13	33	1.85
14301--14506	87	2.4	86	80	8	238	36	25	7	31	1.83
23415--23439	2	12.5	2	100	0	50	48	0	0	52	1.00
28284--28686	157	2.6	156	82	9	514	31	15	18	35	1.92
29007--29078	28	2.6	28	86	0	99	30	19	25	25	1.98
30459--30501	5	9.0	5	90	10	56	2	13	0	83	0.74
30468--30508	18	2.2	19	86	4	57	7	9	0	82	0.83
32398--32489	46	2.0	46	100	0	184	32	6	21	39	1.79
34198--34234	17	2.2	17	95	0	65	27	35	10	27	1.90

Tables:   1

The End!