genome.fa.s9779.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009779.1 Corchorus capsularis cultivar CVL-1 contig09800, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95165

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
284--332	21	2.4	21	86	6	66	34	4	2	59	1.28
284--324	19	2.2	19	86	0	55	36	4	0	58	1.20
437--487	22	2.3	22	96	0	93	33	9	11	45	1.74
1800--1835	15	2.4	15	100	0	72	38	19	8	33	1.82
1965--2077	57	1.9	59	89	3	176	63	9	16	9	1.50
2121--2151	2	15.5	2	100	0	62	48	0	0	51	1.00
3652--3688	18	2.1	18	100	0	74	27	37	0	35	1.57
6452--6539	44	2.0	44	100	0	176	34	9	18	38	1.82
7058--7094	17	2.2	17	90	0	56	24	35	13	27	1.93
12040--12230	40	5.2	40	64	26	118	43	7	23	25	1.79
12027--12267	71	3.4	71	90	2	376	42	7	23	26	1.80
12232--12612	37	10.1	36	77	12	295	44	9	19	25	1.81
12238--12615	73	5.0	73	73	16	259	44	9	19	25	1.81
12629--12956	41	8.5	40	77	12	364	44	10	21	23	1.84
12629--12911	76	3.7	76	98	0	541	44	10	20	24	1.83
12629--12989	117	3.1	116	81	9	422	44	10	20	24	1.83
12629--13004	152	2.5	151	87	7	453	44	10	19	24	1.82
12959--13057	36	2.8	36	81	9	105	51	11	11	26	1.70
13067--13332	111	2.4	111	89	1	390	40	8	28	22	1.82
13080--13351	37	7.4	37	87	6	347	39	9	28	23	1.85
13344--13457	36	3.2	36	89	2	167	38	9	21	29	1.86
14108--14134	14	1.9	14	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14678--14764	28	3.1	28	86	5	104	26	21	17	34	1.95
26206--26400	98	2.0	96	97	2	372	27	13	18	40	1.88
37327--37369	21	2.0	21	82	8	52	60	6	9	23	1.51
40293--40318	2	13.0	2	100	0	52	50	0	0	50	1.00
48485--48509	2	12.5	2	100	0	50	52	0	0	48	1.00
51183--51239	20	2.9	19	69	5	60	28	1	14	56	1.48
53414--53580	31	5.5	31	68	14	134	33	20	19	26	1.96
53450--53548	29	3.4	29	71	19	89	33	20	20	26	1.97
53418--53579	60	2.7	60	92	2	265	34	20	19	25	1.96
53608--53775	31	5.6	29	65	16	92	27	19	18	33	1.95
53609--53771	60	2.7	60	91	1	265	26	19	18	34	1.95
53642--53740	29	3.3	29	66	10	83	29	20	16	34	1.94
53793--53870	39	2.0	39	97	0	147	28	26	6	38	1.81
63169--63324	36	4.3	36	89	2	197	28	23	10	38	1.87
63313--63422	37	3.0	37	88	5	152	24	28	7	40	1.82
63331--63452	37	3.3	36	87	5	156	22	29	6	40	1.79
63525--63748	117	1.9	115	91	1	367	25	19	10	45	1.82
63603--63809	76	2.7	76	98	1	398	24	20	11	43	1.84
63558--63809	41	6.5	40	79	12	301	23	21	11	44	1.84
63525--63784	117	2.3	116	87	5	352	25	19	10	44	1.83
63822--64128	38	8.0	38	74	13	211	25	19	10	44	1.82
64099--64326	71	3.2	71	93	1	375	24	23	8	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64207--64326	40	3.2	40	66	27	109	23	22	10	44	1.83
69031--69066	17	2.1	18	94	5	65	58	2	27	11	1.46
69510--69653	68	2.1	69	94	2	254	31	15	13	39	1.85
91666--91704	19	2.1	19	85	0	51	56	5	23	15	1.59
93296--93359	16	4.0	16	80	6	67	54	1	37	6	1.35
93903--94310	91	4.5	91	77	5	317	45	14	6	33	1.72

Tables:   1

The End!