Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009780.1 Corchorus capsularis cultivar CVL-1 contig09801, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29198

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--58
2
29.0
2
100
0
116
0
50
0
50
1.00
1595--1652
23
2.5
24
72
18
59
48
6
17
27
1.72
8281--8310
2
15.0
2
92
0
51
50
0
3
46
1.18
9487--9543
22
2.6
22
100
0
114
49
10
10
29
1.71
11004--11070
34
2.0
34
88
5
100
43
14
4
37
1.66
11180--11232
6
6.9
8
74
22
51
50
0
1
47
1.12
11182--11222
17
2.3
18
95
4
75
53
0
2
43
1.13
11197--11235
20
2.0
20
100
0
78
53
0
0
46
1.00
12309--12344
18
2.0
18
100
0
72
27
16
11
44
1.82
15257--15294
2
20.0
2
84
10
53
50
2
0
47
1.15
15243--15294
19
2.8
19
82
2
61
48
5
0
46
1.26
21170--21224
24
2.2
24
90
3
92
34
20
12
32
1.90
24991--25033
21
2.1
20
82
4
50
67
9
9
13
1.42
25759--25788
16
1.9
15
93
6
51
76
6
3
13
1.11
26384--26423
19
2.2
18
86
4
53
30
20
5
45
1.72

Tables:   1

The End!