genome.fa.s9782.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009782.1 Corchorus capsularis cultivar CVL-1 contig09803, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117801

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3522--3546	12	2.1	12	100	0	50	0	16	0	84	0.63
11425--11449	11	2.3	11	100	0	50	0	40	0	60	0.97
14222--14482	106	2.5	105	87	5	359	40	8	9	41	1.68
19425--19499	26	2.9	26	94	2	134	44	21	8	26	1.80
19374--19543	89	1.9	89	97	0	322	43	19	8	28	1.81
19522--19604	25	3.0	25	68	26	60	50	12	13	24	1.75
19569--19609	7	6.3	7	88	11	61	46	14	14	24	1.82
23121--23193	29	2.5	29	76	8	78	43	2	1	52	1.24
23243--23308	31	2.1	30	86	10	89	33	18	3	45	1.65
23332--23369	20	1.9	19	94	5	67	23	10	0	65	1.23
23345--23393	12	3.8	12	77	15	53	30	4	0	65	1.11
23447--23573	22	5.8	22	74	8	107	37	11	13	38	1.80
23443--23574	66	2.0	66	83	5	169	35	10	15	38	1.82
23477--23574	22	4.5	22	80	12	112	35	12	15	36	1.85
23445--23628	22	8.3	22	72	12	101	33	9	16	40	1.81
23707--23763	22	2.6	22	75	10	62	35	8	19	36	1.83
23826--23962	22	6.1	23	76	13	99	42	10	14	32	1.79
23956--24028	22	3.3	22	84	3	76	43	10	13	31	1.79
24234--24315	23	3.6	22	85	4	85	40	6	14	39	1.71
24377--24463	42	2.1	42	80	8	97	31	12	17	39	1.87
24157--24626	22	21.6	22	69	13	124	37	10	15	36	1.81
24649--24698	22	2.3	22	75	0	55	46	6	8	40	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28722--28811	46	2.0	46	93	0	153	28	14	13	43	1.83
29047--29121	36	2.1	36	94	0	132	26	14	10	48	1.77
29290--29365	29	2.6	29	78	2	89	40	17	25	17	1.90
33281--33359	32	2.5	32	80	10	83	32	11	18	36	1.87
35735--35838	52	2.1	51	92	5	176	23	18	14	44	1.86
35879--36001	61	2.0	61	96	0	228	39	13	13	32	1.85
36664--36758	31	3.0	32	81	4	111	17	10	34	36	1.85
36898--36927	15	2.0	15	93	0	51	16	13	23	46	1.82
39097--39178	32	2.6	32	80	3	94	45	21	15	17	1.85
39219--39282	29	2.2	29	82	0	74	15	23	23	37	1.93
43718--43880	31	5.2	31	81	1	128	33	23	23	19	1.97
45952--45983	2	16.0	2	100	0	64	50	0	0	50	1.00
51212--51283	33	2.2	33	100	0	144	44	23	2	29	1.67
51272--51300	15	1.9	15	100	0	58	51	13	0	34	1.42
53201--53282	39	2.1	39	88	0	119	31	13	12	42	1.81
53624--53700	29	2.6	29	83	2	82	33	16	6	42	1.74
63880--63928	2	25.5	2	83	8	66	46	4	0	48	1.20
64377--64411	10	3.6	10	84	7	54	17	0	37	45	1.48
64374--64413	19	2.1	19	100	0	80	15	0	35	50	1.44
87837--87866	15	2.0	15	93	0	51	13	23	0	63	1.29
91181--91663	245	2.0	245	96	0	894	37	17	18	26	1.93
93099--93157	23	2.6	23	78	5	66	54	3	13	28	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96590--96941	174	2.0	174	100	0	704	28	13	15	42	1.85
102176--102226	15	3.5	15	75	25	56	49	0	0	50	1.00
102176--102310	27	4.7	27	68	20	96	51	2	0	46	1.13
102131--102310	84	2.1	87	91	4	296	50	2	0	47	1.15
103070--103103	17	2.0	17	94	0	59	29	5	14	50	1.67
103476--103500	12	2.1	12	100	0	50	16	28	0	56	1.41
105178--105222	21	2.2	21	84	11	58	33	4	2	60	1.29
108195--108269	16	4.8	16	83	3	98	40	37	13	9	1.77
108195--108269	31	2.4	32	88	2	107	40	37	13	9	1.77
109295--109336	2	21.0	2	81	18	52	47	0	4	47	1.23
109295--109336	13	3.3	13	81	15	52	47	0	4	47	1.23
109295--109336	11	3.8	11	90	9	59	47	0	4	47	1.23
109618--109648	16	1.9	16	93	0	53	45	35	16	3	1.63
109694--109731	15	2.4	17	87	12	55	36	39	15	7	1.77
110356--110391	19	1.9	20	88	11	58	30	0	0	69	0.89
110479--110529	19	2.6	19	84	3	57	35	1	0	62	1.06
111720--111841	61	2.0	61	96	0	226	38	17	9	35	1.81

Tables:   1

The End!