Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009784.1 Corchorus capsularis cultivar CVL-1 contig09805, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23358

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4022--4067
21
2.2
21
88
7
67
47
23
2
26
1.63
4198--4262
22
3.0
22
77
4
60
21
4
26
47
1.70
4462--4518
21
2.7
23
78
13
68
29
12
14
43
1.81
4820--4871
21
2.5
21
80
0
59
25
3
23
48
1.68
4920--4967
20
2.3
21
82
3
62
12
14
25
47
1.79
6516--6542
2
13.5
2
100
0
54
0
48
0
51
1.00
8105--8289
27
6.9
25
73
16
90
21
22
3
52
1.62
8317--8616
165
1.8
165
90
2
487
22
19
5
53
1.64
8645--8800
22
7.4
22
78
10
130
21
21
3
53
1.62
8705--8762
7
8.3
7
77
7
55
17
18
3
60
1.50
8594--8788
20
9.4
20
74
9
108
21
20
5
52
1.65
8625--8804
42
4.3
43
73
13
124
21
21
3
53
1.60
10294--10344
10
4.8
10
73
21
50
3
23
47
25
1.69
15867--15899
8
4.0
8
92
7
57
24
0
15
60
1.35
15867--15899
17
2.0
16
94
5
57
24
0
15
60
1.35
16826--16876
10
4.8
10
73
21
50
3
23
47
25
1.69
18953--18986
12
2.7
13
90
4
52
20
11
8
58
1.59
18980--19033
28
2.0
25
82
10
63
18
3
14
62
1.46
19547--19578
2
16.0
2
100
0
64
50
0
0
50
1.00
20634--20694
29
2.1
29
96
0
113
16
32
16
34
1.91
21912--21960
24
2.0
24
88
0
71
42
8
14
34
1.75
22013--22062
26
1.9
26
83
0
64
42
18
12
28
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22078--22150
26
2.7
27
76
2
85
42
31
12
13
1.81
22855--22899
19
2.4
19
88
0
72
0
15
4
80
0.87
22860--22899
16
2.5
16
84
8
55
0
15
2
82
0.77
22871--22900
13
2.2
14
94
5
53
0
13
3
83
0.77

Tables:   1

The End!