Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009787.1 Corchorus capsularis cultivar CVL-1 contig09808, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40007

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19--148
33
3.9
32
82
5
134
14
33
36
15
1.88
19--148
34
3.9
33
82
3
154
14
33
36
15
1.88
262--300
18
2.2
18
95
0
69
15
15
20
48
1.81
1867--1957
45
2.0
45
93
0
155
26
24
16
32
1.96
1614--2404
325
2.4
324
91
1
1271
37
17
15
29
1.90
2320--2621
149
2.0
149
99
0
595
34
13
17
33
1.90
2949--3076
22
5.9
22
71
9
100
39
11
10
39
1.76
2941--3072
44
3.0
44
77
6
135
39
12
9
37
1.77
4755--4786
15
2.1
15
94
0
55
6
34
0
59
1.23
10308--10346
18
2.2
18
95
0
69
64
17
0
17
1.30
17578--17636
18
3.3
18
95
0
100
23
45
25
5
1.73
22230--22259
15
2.0
15
100
0
60
26
33
0
40
1.57
23568--23611
12
3.7
12
87
0
61
47
9
2
40
1.48
26019--26121
53
1.9
53
82
0
125
40
14
12
32
1.84
39595--39630
2
18.0
2
100
0
72
50
0
0
50
1.00

Tables:   1

The End!