genome.fa.s9797.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009797.1 Corchorus capsularis cultivar CVL-1 contig09818, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36979

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2367--2769	49	8.2	49	79	7	372	21	29	16	32	1.96
2396--2758	195	1.9	195	81	6	450	22	30	17	30	1.96
6589--6640	14	3.6	15	77	17	56	42	7	15	34	1.75
7249--7407	86	1.8	85	83	2	210	42	11	16	29	1.83
8455--8545	38	2.4	38	92	0	146	35	19	18	26	1.95
8557--8828	39	7.3	38	74	10	222	30	19	18	31	1.96
8569--8828	113	2.3	113	92	1	423	30	19	18	31	1.96
8863--8922	15	3.7	16	73	18	61	31	25	3	40	1.72
8854--8931	34	2.3	34	88	4	122	32	24	5	38	1.77
8872--8945	23	3.0	25	81	13	73	31	25	4	39	1.74
8953--9099	47	3.1	47	89	5	217	21	29	17	31	1.96
10805--10837	16	2.0	17	88	5	50	33	27	9	30	1.88
12141--12539	49	8.2	48	84	4	408	22	29	15	32	1.95
12141--12528	98	4.0	99	85	2	453	22	30	15	31	1.95
12143--12539	147	2.7	146	83	4	476	22	29	15	31	1.95
14199--14258	27	2.5	22	74	23	66	23	13	15	48	1.79
14208--14261	27	2.0	26	96	0	81	22	16	14	46	1.84
16247--16331	30	2.8	31	90	1	127	44	11	10	32	1.75
21968--22016	23	2.2	23	92	3	82	30	14	12	42	1.82
25190--25222	15	2.2	15	89	10	50	54	3	12	30	1.52
25205--25294	26	3.3	26	67	19	76	48	6	18	25	1.72
25230--25404	63	2.6	70	75	15	195	46	7	19	26	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25561--25604	23	1.9	23	90	0	70	47	2	22	27	1.63
25855--25918	26	2.5	26	87	5	94	53	3	15	28	1.57
25901--25951	22	2.3	22	86	6	68	52	0	25	21	1.47
25901--26016	36	3.2	37	79	10	123	55	0	24	19	1.49
25969--26024	29	1.9	29	92	0	94	55	3	21	19	1.58
26035--26213	22	8.5	22	70	21	102	54	6	17	21	1.65
25979--26103	14	8.1	15	67	25	57	53	4	20	21	1.63
26057--26128	36	2.0	36	91	5	119	56	6	15	20	1.62
28238--28264	14	1.9	14	100	0	54	14	0	33	51	1.43
32782--32991	35	6.1	35	86	5	261	37	20	13	28	1.91
32782--32991	105	2.0	103	86	7	291	37	20	13	28	1.91
33433--34040	124	4.9	124	88	2	839	38	14	14	32	1.86
34682--34789	57	1.9	57	88	3	164	29	21	21	27	1.98
35567--35603	19	1.9	19	94	0	65	59	0	8	32	1.27
35570--35627	24	2.4	24	80	5	64	62	1	3	32	1.22
35583--35619	12	3.1	12	96	0	65	64	0	2	32	1.07

Tables:   1

The End!