Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009798.1 Corchorus capsularis cultivar CVL-1 contig09819, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65666

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
666--1038
195
1.9
195
89
3
581
33
17
17
30
1.94
690--1089
195
2.1
194
84
4
520
33
18
18
30
1.94
1322--1884
35
16.1
35
84
7
675
33
19
16
30
1.94
1322--1884
105
5.4
104
88
4
760
33
19
16
30
1.94
22262--22301
19
2.1
19
90
0
62
12
45
5
37
1.64
25408--25438
12
2.6
12
89
0
53
0
0
22
77
0.77
30327--30610
121
2.4
120
82
3
356
29
18
14
37
1.91
35304--35356
16
3.3
16
78
0
61
69
1
11
16
1.26
35287--35357
16
4.2
18
75
10
53
71
1
11
15
1.20
38997--39683
372
1.8
372
99
0
1365
26
25
20
27
1.99
46236--46278
2
21.0
2
90
4
68
46
4
0
48
1.22
46370--46645
109
2.5
109
91
5
421
38
11
1
48
1.51
53023--53072
16
2.9
16
79
8
55
10
10
6
74
1.23
52990--53052
22
2.8
23
83
11
78
11
12
4
71
1.29
53023--53071
17
2.9
17
81
9
55
10
8
6
75
1.18
60698--62176
735
2.0
738
97
0
2770
25
14
17
43
1.86

Tables:   1

The End!