Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009801.1 Corchorus capsularis cultivar CVL-1 contig09822, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24434

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
152--217
31
2.2
31
94
2
116
24
13
21
40
1.89
854--982
66
2.0
66
95
3
233
46
21
17
13
1.83
1838--1900
31
2.0
31
93
0
108
33
34
3
28
1.73
5952--6098
33
4.5
33
87
4
138
10
30
40
19
1.84
15269--15566
43
6.8
41
74
13
211
18
20
6
55
1.65
15267--15366
21
4.6
21
77
16
80
20
19
7
54
1.67
15382--15598
22
10.0
21
76
10
161
17
19
5
56
1.61
15385--15542
65
2.5
64
80
8
178
16
20
6
55
1.64
15606--15655
22
2.3
21
82
3
64
16
22
4
58
1.55
15679--15743
21
3.3
21
68
24
68
13
20
1
64
1.36
15629--15824
35
5.4
36
84
6
220
16
23
3
57
1.53
15769--15816
23
2.1
23
84
7
62
12
22
4
60
1.49
15629--15824
73
2.7
71
83
8
202
16
23
3
57
1.53
15828--16174
55
6.4
55
91
4
555
26
17
7
48
1.73
16002--16170
48
3.4
49
89
6
218
27
18
6
47
1.72
15947--16170
103
2.2
102
91
1
358
27
17
7
48
1.73
15828--16174
158
2.1
161
91
3
547
26
17
7
48
1.73
18259--18294
1
36.0
1
94
0
54
5
0
0
94
0.31
20973--21043
28
2.6
27
79
16
85
43
23
14
18
1.86
21744--21809
15
4.4
15
72
23
59
25
0
16
57
1.39
24163--24228
8
7.9
8
73
20
55
24
3
24
48
1.65
24235--24268
2
17.0
2
100
0
68
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24346--24406
32
1.9
32
86
0
86
22
47
13
16
1.81

Tables:   1

The End!