genome.fa.s9802.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009802.1 Corchorus capsularis cultivar CVL-1 contig09823, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62703

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2628--2666	1	39.0	1	100	0	78	0	0	0	100	0.00
11851--11886	2	18.0	2	100	0	72	0	0	50	50	1.00
13006--13045	13	3.1	13	88	0	62	22	15	15	47	1.82
15601--15901	49	6.5	48	74	13	193	22	27	14	35	1.93
15662--15741	38	2.1	38	83	4	99	21	30	17	31	1.96
15700--15872	47	3.7	47	83	6	174	21	30	15	32	1.94
15957--16181	63	3.6	63	85	4	278	28	24	14	33	1.94
18851--18878	2	14.0	2	100	0	56	50	0	0	50	1.00
19203--19252	16	3.1	16	75	11	57	14	10	36	40	1.79
19197--19303	32	3.3	32	86	0	151	14	11	36	37	1.83
19496--19538	22	2.0	22	90	0	68	4	9	34	51	1.55
19508--19585	16	4.9	16	82	6	86	3	10	34	51	1.54
21127--21409	63	4.5	63	83	5	288	32	14	24	28	1.94
21405--21707	49	6.5	47	76	11	248	34	16	28	20	1.94
21405--21743	49	7.2	47	75	11	239	33	15	28	22	1.94
21567--21647	38	2.1	38	81	4	92	30	19	29	19	1.97
21541--21702	87	1.9	88	85	3	229	33	16	29	20	1.94
24076--24143	32	2.1	33	88	5	102	27	7	14	50	1.70
27455--27516	32	1.9	32	93	0	106	50	4	27	17	1.67
27499--27599	40	2.5	40	96	0	184	53	2	20	22	1.59
27597--27630	16	2.1	17	88	5	52	58	2	20	17	1.51
27499--27615	40	3.0	39	90	8	168	52	3	21	22	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27642--27724	32	2.5	33	83	13	107	53	4	19	22	1.64
27698--27751	26	2.1	26	93	6	92	53	3	14	27	1.58
27746--27843	14	7.0	14	82	4	126	53	7	20	19	1.68
27737--27862	28	4.5	28	80	6	121	52	5	23	19	1.66
27817--27904	35	2.5	35	77	3	88	47	5	26	20	1.72
27866--27972	22	4.9	22	81	1	108	51	3	21	23	1.64
27884--27969	44	2.0	44	88	0	127	50	2	22	25	1.61
28661--28700	13	3.1	13	85	0	53	25	15	15	45	1.84
30104--30134	15	2.1	15	93	0	53	19	16	0	64	1.29
30089--30162	24	3.0	24	80	6	67	20	18	1	59	1.45
30113--30232	42	2.9	41	82	9	136	22	25	2	50	1.62
30262--30292	14	2.2	14	94	0	53	22	16	6	54	1.64
30533--30775	55	4.5	55	84	7	329	25	18	6	48	1.73
30536--30775	103	2.3	107	84	5	335	26	18	7	48	1.73
34681--34750	27	2.6	27	81	0	86	48	22	11	17	1.79
41030--41060	2	15.5	2	100	0	62	48	0	0	51	1.00
45388--45426	13	3.1	13	88	3	53	33	41	15	10	1.81
45393--45432	13	3.1	13	92	0	62	27	45	15	12	1.82
55100--55147	26	1.9	26	91	8	82	18	12	37	31	1.88
56490--56530	21	2.0	21	95	0	73	53	9	24	12	1.68
61920--61999	36	2.4	33	81	8	90	52	7	18	21	1.70
62032--62091	22	2.7	23	87	5	72	53	3	20	23	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62058--62105	22	2.3	21	86	13	64	54	4	20	20	1.61
62087--62500	55	7.5	55	92	0	677	50	7	16	25	1.72

Tables:   1

The End!