genome.fa.s9803.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009803.1 Corchorus capsularis cultivar CVL-1 contig09824, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44491

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141--200	22	2.7	22	87	5	77	53	5	18	23	1.64
167--214	22	2.3	21	86	13	64	54	4	20	20	1.61
196--939	55	13.6	55	94	0	1197	50	7	16	25	1.71
664--747	25	3.2	25	64	23	64	50	7	19	23	1.72
1128--1203	36	2.1	36	83	7	102	51	3	25	19	1.64
1156--1247	14	6.3	14	68	14	53	55	2	21	20	1.54
1166--1282	22	5.5	22	75	9	91	57	2	21	18	1.53
1231--1321	27	3.2	26	71	22	67	59	1	23	16	1.44
1228--1317	7	13.1	7	74	13	80	56	1	24	17	1.48
1264--1307	19	2.2	19	92	8	70	54	0	29	15	1.42
5111--5196	39	2.3	39	82	8	106	33	15	23	27	1.94
5166--5334	67	2.5	69	77	7	168	37	10	22	30	1.87
5670--5835	58	2.9	58	90	0	262	39	13	22	24	1.90
5936--6326	50	7.7	50	77	3	361	35	10	27	26	1.90
6041--6326	152	1.9	152	87	1	421	35	10	27	26	1.89
5936--6326	102	3.9	101	77	7	371	35	10	27	26	1.90
6059--6375	152	2.1	152	82	2	368	36	9	26	27	1.87
6473--6590	45	2.6	45	83	0	146	28	23	18	28	1.98
7429--7472	22	2.0	22	86	0	61	27	22	25	25	2.00
7375--7475	52	1.9	52	95	0	184	24	25	23	25	2.00
11649--11749	52	1.9	52	89	0	157	23	24	23	27	2.00
11776--11816	21	2.0	21	90	0	64	21	21	29	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16021--16087	18	3.7	18	84	7	91	22	40	23	13	1.89
16021--16091	36	2.0	36	91	0	115	21	42	23	12	1.87
17330--17423	15	6.2	15	68	1	53	38	19	30	11	1.87
17398--17500	51	2.0	51	90	0	161	32	18	28	21	1.97
23293--23373	33	2.6	32	84	11	105	8	25	40	24	1.84
23309--23373	33	2.0	33	93	0	112	10	26	38	24	1.88
28432--28469	19	2.0	19	85	10	51	60	28	0	10	1.30
29850--29930	33	2.6	32	84	11	105	8	25	40	24	1.84
29866--29930	33	2.0	33	93	0	112	10	26	38	24	1.88
33945--33996	24	2.2	24	100	0	104	28	19	3	48	1.66
35388--35420	2	16.5	2	100	0	66	51	0	0	48	1.00
38075--38118	16	2.8	16	100	0	88	20	45	27	6	1.76
39655--40348	38	18.3	37	81	7	572	29	21	17	31	1.96
39658--40349	76	9.1	76	81	5	638	29	21	18	31	1.97
39658--40353	114	6.1	114	81	4	672	29	21	18	31	1.97
41293--41328	18	2.1	17	94	5	63	63	8	16	11	1.49
41791--41815	10	2.5	10	100	0	50	28	8	24	40	1.83
44013--44046	6	5.7	6	85	0	50	82	2	11	2	0.89
44012--44052	12	3.4	12	86	0	55	78	2	9	9	1.06

Tables:   1

The End!