Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009810.1 Corchorus capsularis cultivar CVL-1 contig09831, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16044

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4504--4537
8
4.1
8
85
7
50
23
2
14
58
1.50
6287--6546
107
2.4
107
91
1
407
40
6
8
43
1.62
8261--8344
44
1.9
45
87
4
127
40
10
10
38
1.75
8799--8834
15
2.5
14
86
4
54
25
16
8
50
1.73
8799--8830
15
2.1
15
94
0
55
25
15
6
53
1.65
9512--9661
72
2.0
73
89
6
230
20
13
9
56
1.64
10835--10918
39
2.1
39
91
2
132
27
21
15
35
1.94
14462--14488
13
2.1
13
100
0
54
62
0
0
37
0.95
14738--14784
21
2.3
21
77
3
51
53
12
6
27
1.63
15157--15212
21
2.6
23
72
11
55
28
14
7
50
1.69
15363--15646
22
13.1
22
70
17
96
36
15
9
39
1.79
15376--15477
23
4.5
24
84
8
90
39
14
8
37
1.78
15393--15499
45
2.4
46
82
3
128
35
14
10
39
1.81
15186--15666
44
11.0
44
70
14
239
35
16
10
37
1.82
15772--15938
22
7.6
22
76
8
119
34
13
8
43
1.75
15761--15940
88
2.1
86
80
7
193
34
14
8
42
1.76
15902--16001
21
4.5
22
72
15
82
32
13
11
44
1.78

Tables:   1

The End!