Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009812.1 Corchorus capsularis cultivar CVL-1 contig09833, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5122
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28


Found at i:3458 original size:13 final size:13

Alignment explanation


    Indices: 3440--3468  Score: 58
    Period size: 13  Copynumber: 2.2  Consensus size: 13

       3430 TACAAAATCC

                         
       3440 CTAATGCAGAAAT
          1 CTAATGCAGAAAT

                         
       3453 CTAATGCAGAAAT
          1 CTAATGCAGAAAT

               
       3466 CTA
          1 CTA

       3469 TAATAAAGGA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   16  1.00

ACGTcount: A:0.45, C:0.17, G:0.14, T:0.24


Consensus pattern (13 bp):   
CTAATGCAGAAAT
Done.