genome.fa.s9814.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009814.1 Corchorus capsularis cultivar CVL-1 contig09835, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83157

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2--167	87	1.9	87	96	0	305	42	5	16	34	1.72
362--418	26	2.2	26	96	0	105	61	7	5	26	1.43
362--426	26	2.5	26	90	5	87	60	6	7	26	1.48
1199--1228	13	2.4	12	94	5	51	40	16	20	23	1.91
1312--1352	20	2.1	20	90	4	66	26	21	34	17	1.95
3310--3338	14	2.0	15	93	6	51	34	6	3	55	1.44
5363--5389	13	2.1	13	100	0	54	37	22	25	14	1.93
22284--22323	19	2.2	19	86	4	55	15	32	10	42	1.79
23325--24124	36	22.8	34	82	8	787	27	16	10	45	1.80
23475--24124	36	18.3	36	86	6	803	27	15	11	46	1.80
23325--24124	142	5.7	139	81	8	815	27	16	10	45	1.80
27138--27182	21	2.1	21	95	0	81	17	11	20	51	1.75
35628--35703	26	2.9	26	74	3	73	5	32	1	60	1.27
36782--36867	33	2.7	32	83	8	104	22	41	27	8	1.82
45414--45482	21	3.2	22	69	27	67	27	13	14	44	1.82
45394--45483	42	2.0	45	87	8	132	27	13	13	45	1.81
53978--54042	30	2.2	30	94	0	112	33	20	24	21	1.97
54534--54579	18	2.6	18	100	0	92	36	0	23	39	1.55
62375--62414	21	1.9	21	85	10	55	15	7	12	65	1.47
63880--64000	33	3.7	33	77	7	86	15	39	30	14	1.87
63926--64000	33	2.3	33	84	6	98	14	38	33	13	1.85
64124--64220	33	2.9	33	75	11	101	14	42	30	12	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64284--64426	32	4.4	32	92	3	225	13	29	41	15	1.86
74595--74626	16	2.0	16	93	0	55	56	34	6	3	1.40
74650--74708	31	1.9	31	100	0	118	30	10	18	40	1.84
76785--76840	29	2.0	27	86	6	76	62	3	19	14	1.46
76828--76904	32	2.4	33	87	10	115	48	5	27	19	1.70
76878--76990	40	2.8	40	79	2	138	49	3	23	23	1.65
77059--77120	32	1.9	33	93	3	108	51	4	17	25	1.65
77058--77152	26	3.4	26	83	12	93	52	4	16	26	1.62
77147--77278	14	9.4	14	77	9	126	56	4	19	19	1.59
77139--77281	7	20.1	7	69	10	67	57	4	18	19	1.57
77168--77293	42	2.9	43	95	3	227	55	4	19	19	1.61
77363--77393	16	1.9	16	93	0	53	48	6	22	22	1.73
77379--77556	44	4.3	43	78	13	194	52	4	20	22	1.64
77380--77457	22	3.5	22	86	6	122	53	5	19	21	1.64
77415--77495	35	2.2	36	91	6	128	51	3	22	22	1.63
77364--77538	79	2.2	82	85	8	243	53	4	19	22	1.63
77460--77545	22	3.9	22	76	14	79	54	3	18	23	1.59
78231--78299	28	2.6	26	80	15	70	15	27	1	55	1.50
78404--78457	28	2.0	27	85	7	74	25	16	7	50	1.71
78412--78456	14	3.2	14	78	12	56	24	17	6	51	1.70
78471--78516	14	3.4	14	78	3	58	17	21	4	56	1.58
78511--78578	26	2.6	27	81	6	68	26	19	4	50	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78648--78764	40	2.9	39	86	7	155	25	23	2	48	1.63
78655--78896	40	6.3	36	71	19	145	21	19	4	54	1.62
78693--78877	76	2.5	72	73	16	158	21	19	4	55	1.60
78736--78884	16	9.4	16	63	27	61	18	18	6	57	1.61
79761--79789	2	14.5	2	100	0	58	48	0	0	51	1.00
82833--82868	18	2.0	18	88	0	54	36	11	22	30	1.89

Tables:   1

The End!