Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009817.1 Corchorus capsularis cultivar CVL-1 contig09838, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5951
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32


Found at i:3577 original size:17 final size:17

Alignment explanation


    Indices: 3555--3589  Score: 61
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       3545 CAATGCTTAA

                             
       3555 TATGTTAGTTATCCTAG
          1 TATGTTAGTTATCCTAG

                         *   
       3572 TATGTTAGTTATCTTAG
          1 TATGTTAGTTATCCTAG

             
       3589 T
          1 T

       3590 CAACTTAGTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.23, C:0.09, G:0.17, T:0.51


Consensus pattern (17 bp):   
TATGTTAGTTATCCTAG
Done.