genome.fa.s9822.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009822.1 Corchorus capsularis cultivar CVL-1 contig09843, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  160891

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1928--1973	19	2.4	19	100	0	92	30	21	6	41	1.78
4521--4548	14	2.0	14	100	0	56	35	14	35	14	1.86
5601--5647	24	2.0	23	84	12	60	14	12	4	68	1.36
7171--7206	19	1.9	18	88	5	54	41	2	22	33	1.68
7838--7912	27	2.8	27	87	0	105	46	26	12	14	1.79
11397--11449	28	1.9	28	92	3	90	16	18	24	39	1.91
11403--11475	28	2.6	28	88	0	101	16	12	27	43	1.83
16199--16291	21	4.8	21	67	22	67	39	3	18	38	1.67
16178--16326	56	2.7	56	94	0	253	39	6	16	36	1.75
16274--16363	43	2.1	44	91	2	146	37	8	18	34	1.82
16226--16576	99	3.5	100	73	13	346	36	7	19	36	1.80
16346--16381	18	2.0	18	100	0	72	33	5	22	38	1.77
16300--16667	61	6.0	61	76	12	351	36	7	19	36	1.81
16168--16523	160	2.3	160	89	4	546	37	7	18	36	1.79
16442--16609	43	3.9	43	98	0	327	37	7	18	36	1.80
16589--16627	18	2.2	18	95	0	69	38	5	17	38	1.72
16503--16710	104	2.0	104	94	0	362	37	7	17	36	1.79
16607--16723	43	2.7	43	86	5	173	40	7	16	35	1.77
16707--16746	21	1.9	21	89	0	62	45	2	17	35	1.62
16715--16757	21	2.0	21	86	0	59	37	2	18	41	1.63
16752--16810	19	3.3	19	74	13	70	35	10	16	37	1.83
16751--16854	35	3.0	35	86	0	136	36	9	19	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16795--16865	35	2.1	34	82	10	85	36	9	21	32	1.86
30226--30337	55	2.0	55	94	3	199	30	21	14	33	1.93
40509--40536	2	14.0	2	100	0	56	50	0	0	50	1.00
41984--42062	17	4.9	16	76	15	65	3	17	0	78	0.90
41984--42044	9	7.0	9	75	7	54	3	16	0	80	0.84
42089--42190	35	2.9	34	81	14	109	17	40	33	8	1.81
48319--48398	30	2.7	30	92	0	124	16	25	22	36	1.94
53131--53185	23	2.4	23	77	17	60	69	3	9	18	1.30
56421--56447	14	1.9	14	100	0	54	0	18	0	81	0.69
62885--62944	21	2.9	21	76	0	75	31	21	11	35	1.90
69351--69410	21	2.9	21	76	0	75	31	21	11	35	1.90
71413--71446	2	17.0	2	100	0	68	0	0	50	50	1.00
76690--76724	11	3.2	11	83	0	52	80	14	2	2	0.95
78273--78414	73	2.0	70	79	8	151	36	14	14	34	1.87
78290--78432	36	3.9	36	86	2	189	33	13	17	34	1.90
79932--79961	2	15.0	2	100	0	60	50	0	0	50	1.00
84041--84081	21	2.0	21	85	9	57	60	2	0	36	1.10
86025--86081	30	1.9	30	92	0	96	28	24	22	24	2.00
91859--91898	17	2.3	18	83	12	57	37	0	7	55	1.29
92857--92914	27	2.1	28	96	3	109	39	10	6	43	1.66
96070--96513	166	2.7	162	79	6	495	30	13	15	40	1.87
104763--104790	1	28.0	1	100	0	56	0	0	0	100	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105017--105096	31	2.6	31	73	18	87	25	1	18	55	1.51
110638--110875	118	2.0	118	100	0	476	40	15	11	32	1.83
122664--122706	5	8.6	5	100	0	86	20	39	18	20	1.93
124851--124877	3	9.0	3	100	0	54	66	0	33	0	0.92
125241--125270	3	10.0	3	100	0	60	33	0	0	66	0.92
125502--125566	30	2.2	30	94	0	112	33	9	7	49	1.63
141200--141247	24	2.0	24	87	0	69	33	8	12	45	1.72
160861--160887	9	3.0	9	100	0	54	55	11	33	0	1.35

Tables:   1

The End!