Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009824.1 Corchorus capsularis cultivar CVL-1 contig09845, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50642

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1142--1271
26
5.0
25
68
12
82
17
15
38
28
1.90
1150--1271
53
2.3
52
87
4
165
18
13
38
29
1.89
1312--1356
15
3.0
15
93
0
72
11
26
46
15
1.79
1442--1471
15
2.0
15
93
0
51
10
26
50
13
1.73
1457--1514
24
2.4
24
91
0
98
8
18
51
20
1.72
1507--1582
23
3.3
23
73
14
75
13
21
40
25
1.89
1712--1747
15
2.4
15
90
0
54
0
25
8
66
1.19
1719--1771
21
2.5
22
81
9
65
1
28
5
64
1.27
1759--1789
15
2.1
15
93
0
53
3
32
6
58
1.40
1704--1780
36
2.1
35
81
13
86
1
27
6
64
1.25
7573--7604
10
3.1
10
95
4
55
68
0
21
9
1.17
14060--14093
3
11.3
3
100
0
68
67
0
0
32
0.91
16570--16599
2
15.0
2
100
0
60
50
0
0
50
1.00
17120--17218
33
3.0
33
95
0
171
14
40
36
9
1.77
17291--17385
33
2.8
33
85
4
120
15
32
35
15
1.90
17723--17749
5
5.4
5
100
0
54
18
0
0
81
0.69
35337--35368
16
2.0
16
100
0
64
50
31
6
12
1.65
38555--38586
6
5.3
6
100
0
64
18
0
50
31
1.48
44729--44818
34
2.7
34
91
3
139
16
38
32
12
1.86
44729--44835
34
3.2
34
86
3
112
17
38
30
13
1.88
44826--44910
31
2.7
31
88
3
125
7
35
45
11
1.68
44968--45078
33
3.5
30
78
8
96
13
36
36
13
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45020--45118
33
3.0
34
77
12
100
13
30
39
17
1.87
45163--45202
21
1.9
21
85
10
55
40
10
25
25
1.86

Tables:   1

The End!